PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca61883.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HD-ZIP

Protein Properties

Length: 781aa MW: 86240.7 Da PI: 7.7072

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca61883.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	25	80	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++R+++t++q++ Lee+F+++ +p++++r++L +lgL+ +q+k+WFqN+R++ k Dca61883.1 25 RKSRQRHTSHQIKCLEEFFKQCEHPNKRQRRQLGIQLGLESSQIKYWFQNKRTQIK 80 89**************************************************9877 PP
2	Homeobox	14.8	4.9e-05	243	257	42	56
HHHHHHHHHHHHHHH CS Homeobox 42 rqVkvWFqNrRakek 56 +q+k+WFqN+R++ k Dca61883.1 243 SQIKYWFQNKRTQIK 257 79*********9877 PP
3	START	63.8	5.2e-21	390	584	1	163
HHHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGG........................CT-T CS START 1 elaeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskvdsgealrasgvvdmvlallveellddke........................qWde 74 e+a +a++el+k+ +++p+ vks+ e+ +++ f+ + ++e +++sgv m++ lv +ld +W Dca61883.1 390 EIAASAMNELIKLLRVDQPLLVKSPiEKGHVLAYYKGFSMHNP-RMESSKDSGVIAMDARFLVDLYLDAVSlnsplsssillivgicfnllilqeKWVD 487 57899******************98889999*99999.************99999999988999********************* PP T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 ++ k++t++v++ g g lql+ ++ + splv R+f+ +Ry+ + g+wvi+dvS +se p s+ + ++pSg+lie+++ng s Dca61883.1 488 VFPsvfsKVKTVNVVRAGmsescsGSLQLIHEQMHVVSPLVQqREFYLLRYCLVIEPGTWVIADVSYNSEGASPVSPTCW---KHPSGCLIEQMPNGLS 583 *******************************************************************999866655...5***********98 PP E CS START 163 k 163 Dca61883.1 584 S 584 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.7E-19	11	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.43E-18	14	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	22	82	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	24	86	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-17	25	80	IPR001356	Homeobox domain
CDD	cd00086	6.48E-16	25	83	No hit	No description
SMART	SM00389	0.27	198	263	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.0E-4	242	264	IPR009057	Homeodomain-like
PROSITE profile	PS50848	20.83	381	585	IPR002913	START domain
SuperFamily	SSF55961	1.51E-14	382	466	No hit	No description
Pfam	PF01852	1.1E-13	483	584	IPR002913	START domain
SuperFamily	SSF55961	1.51E-14	493	594	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.2E-4	504	581	IPR023393	START-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MAFPRRGGLS NRSASSEGDD SQNPRKSRQR HTSHQIKCLE EFFKQCEHPN KRQRRQLGIQ 60 LGLESSQIKY WFQNKRTQIK AQNERANIGA LRSEYDRLQS ENATLKEALK RRMSRPCGMC 120 GGGPVANNET IDKLQQENTE LMCEYAKMAS SVVENTRILL SSLIFNTENT ITAGLASGNP 180 TFHPLVDNVD PKNINLADRI KANSELEKVQ MTEIAASAMN ELVKLLRVDQ PLLVKSPIEK 240 VSSQIKYWFQ NKRTQIKAQN ERANIGALRS ECDRLQSENA TLKEALKRRM SRPCGMCGGG 300 PVANNETIDK LQQENTELMC EYAKMACSVL ENTRILLSSL TFNTENTITA GLASGNPAFH 360 PVVDNIDPKN LNLADRIKAN LELEKVQMTE IAASAMNELI KLLRVDQPLL VKSPIEKGHV 420 LAYYKGFSMH NPRMESSKDS GVIAMDARFL VDLYLDAVSL NSPLSSSILL IVGICFNLLI 480 LQEKWVDVFP SVFSKVKTVN VVRAGMSESC SGSLQLIHEQ MHVVSPLVQQ REFYLLRYCL 540 VIEPGTWVIA DVSYNSEGAS PVSPTCWKHP SGCLIEQMPN GLSSIGFRNT SSPNEPVGTV 600 IQAVSTFWVP ASPETVLSYL NDNLVRSQWD ALCFDCNVSA FLQIPTGHHP LNGISILRPG 660 NPREDLMIFQ ESTMGPVEST LIYAAVDSSS LLELAFGLVS PTVPILASGF VITRDGPDMR 720 HAPSTSTSKP WTSGSLVTAA FQILCSSSPS AEERALCLAS KVKALAERAV SVVRAVLNHA 780 D

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MAFPRRGGLS NRSASSEGDD SQNPRKSRQR HTSHQIKCLE EFFKQCEHPN KRQRRQLGIQ  60
LGLESSQIKY WFQNKRTQIK AQNERANIGA LRSEYDRLQS ENATLKEALK RRMSRPCGMC  120
GGGPVANNET IDKLQQENTE LMCEYAKMAS SVVENTRILL SSLIFNTENT ITAGLASGNP  180
TFHPLVDNVD PKNINLADRI KANSELEKVQ MTEIAASAMN ELVKLLRVDQ PLLVKSPIEK  240
VSSQIKYWFQ NKRTQIKAQN ERANIGALRS ECDRLQSENA TLKEALKRRM SRPCGMCGGG  300
PVANNETIDK LQQENTELMC EYAKMACSVL ENTRILLSSL TFNTENTITA GLASGNPAFH  360
PVVDNIDPKN LNLADRIKAN LELEKVQMTE IAASAMNELI KLLRVDQPLL VKSPIEKGHV  420
LAYYKGFSMH NPRMESSKDS GVIAMDARFL VDLYLDAVSL NSPLSSSILL IVGICFNLLI  480
LQEKWVDVFP SVFSKVKTVN VVRAGMSESC SGSLQLIHEQ MHVVSPLVQQ REFYLLRYCL  540
VIEPGTWVIA DVSYNSEGAS PVSPTCWKHP SGCLIEQMPN GLSSIGFRNT SSPNEPVGTV  600
IQAVSTFWVP ASPETVLSYL NDNLVRSQWD ALCFDCNVSA FLQIPTGHHP LNGISILRPG  660
NPREDLMIFQ ESTMGPVEST LIYAAVDSSS LLELAFGLVS PTVPILASGF VITRDGPDMR  720
HAPSTSTSKP WTSGSLVTAA FQILCSSSPS AEERALCLAS KVKALAERAV SVVRAVLNHA  780
D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	7e-51	homeodomain GLABROUS 11