PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca62106.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 465aa    MW: 52056.2 Da    PI: 7.0981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca62106.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.7e-2474220198
                 EEEE-..-HHHHTT-EE--HHH.HTT.............................................---..--SEEEEEETTS-EEEEEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............................................ggkkeesktltledesgrsWevkliyrk 54 
                 f+kv tpsdv+k++rlv+pk++ae++                                             +++++ +  l +ed++g+sW+++++y++
  Dca62106.1  74 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsshhnnnnnnyinnnnnnnnscnnntninnnsnsennnnnnSSNNKAGLLLNFEDRTGKSWRFRYSYWN 172
                 89******************************999999999999888888888888887777777766666333337789******************* PP

                 ETTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SS..SEE..EEEEE- CS
          B3  55 ksgryvltkGWkeFvkangLkegDfvvFk...ldgr..sefelvvkvfr 98 
                 +s++yv+tkGW++Fvk+++L +gD+v F+     ++  s+ ++++ ++r
  Dca62106.1 173 SSQSYVMTKGWSRFVKEKQLSAGDIVSFQravG-DDiqSKNTFFIDWRR 220
                 *****************************4321.222344555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-3569103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.43E-2471104IPR015300DNA-binding pseudobarrel domain
CDDcd100178.53E-1972202No hitNo description
PfamPF023623.1E-2274221IPR003340B3 DNA binding domain
SMARTSM010196.7E-2174222IPR003340B3 DNA binding domain
SuperFamilySSF1019362.43E-24145203IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-35145223IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.928154222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDPRENQEQE QEQEQELRLQ NRDWLMDPET QEVRIEHESG GDENPEDDDR GGGHGGVARS  60
SGYGVVVVER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSHHNNN NNNYINNNNN  120
NNNSCNNNTN INNNSNSENN NNNNSSNNKA GLLLNFEDRT GKSWRFRYSY WNSSQSYVMT  180
KGWSRFVKEK QLSAGDIVSF QRAVGDDIQS KNTFFIDWRR RPPDHHQYHH HHHHHLGTAF  240
SVHHSIPGWM RGSGSSSSII PSPITNPTLF LRSHPHESHP LHHHSNNNNA INWDHSSYNS  300
SSNNNNNVTH LSMVPYAYGG SGTTSVVNPS AGSSLILLRS SAPNPSTINQ NPHLVPNYPH  360
YHQLNPSSST TPSNSLYQGV STATRLLLEP PNSKVYDSVP VVHGKAASSS SASSAPSPHG  420
GGAGKRSLRL FGVNMEYDQH HHHPHRPQFD DSMDPSTSNF NAPQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-54672221114B3 domain-containing transcription factor NGA1
5os9_B2e-54672221114B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-53B3 family protein