PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca62148.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 184aa    MW: 19523 Da    PI: 4.3577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca62148.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-161362155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+G+r   + g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  Dca62148.1 13 PVYRGIR--TRGGKWVSEIREPRK---TTRIWLGTFSTPEMAAAAYDVAALALKG 62
                68****6..568*********843...5***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-91362IPR001471AP2/ERF domain
PROSITE profilePS5103219.8361470IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-271471IPR001471AP2/ERF domain
SMARTSM003801.3E-281476IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-181471IPR016177DNA-binding domain
CDDcd000181.07E-161572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MLGPTPYLTG KNPVYRGIRT RGGKWVSEIR EPRKTTRIWL GTFSTPEMAA AAYDVAALAL  60
KGVEAVLNFP EDVIRYPVPG SALPADIRRA AAAAAAMREA KEKAAVVVEE AVVEKGGGID  120
GGGGSESKEE YVDIEALFDM PNLLVDMAGG MMVSPPRMTS TVDDHDFDDD DDGGGGGISS  180
LWSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844449.11e-62ethylene-responsive transcription factor ERF027-like
SwissprotQ9SJR06e-42ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0K9R4J69e-60A0A0K9R4J6_SPIOL; Uncharacterized protein
STRINGXP_010278525.11e-58(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-30ERF family protein