PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca62279.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 331aa MW: 37760.6 Da PI: 6.7931

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca62279.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.6	3e-50	40	168	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kg 97 pGfrFhPtdeelv++yLk+kv++k+l++ e+ik++diyk++PwdL k + ++kewyf++kr +ky+++ r+nr+t sg+Wkatg d++++s+ ++ Dca62279.1 40 PGFRFHPTDEELVSFYLKRKVDKKPLSI-EIIKHMDIYKHDPWDLAKvGNSVGDKEWYFYCKRGRKYRNSVRPNRVTGSGFWKATGIDRPIYSNggeGH 137 9*************************.89**********8424445899**********************************966555 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vglkk+Lv+y+g+a kg+ktdW+mhe+rl Dca62279.1 138 RCVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 168 66*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-52	35	175	IPR003441	NAC domain
PROSITE profile	PS51005	48.962	38	190	IPR003441	NAC domain
Pfam	PF02365	9.3E-25	40	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDVRSTMSCV SSQDNKDSGG GCGNKDVVVE VVDDHEGPLP GFRFHPTDEE LVSFYLKRKV 60 DKKPLSIEII KHMDIYKHDP WDLAKVGNSV GDKEWYFYCK RGRKYRNSVR PNRVTGSGFW 120 KATGIDRPIY SNGGEGHRCV GLKKSLVYYR GSAGKGTKTD WMMHEFRLPT TEVQNHGINS 180 SISTTNTFEA VRNLDAMXDW RELSTRRNAS NPNSKTSSFD SNHNNERYIS FTTRPTVLPN 240 NGFYTAVSPD IRERLSPYDN NDMTMDQKNV HFQDNHHQPQ SNSVVNLTPT TSNSTMLNVE 300 EDYENDFQCF EGHSWEDLTS VVEFAIKTPL L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-43	40	168	17	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021775558.1	1e-121	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	5e-74	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0J8BD73	1e-115	A0A0J8BD73_BETVU; Uncharacterized protein
STRING	XP_010693169.1	1e-115	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-76	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]