PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca6236.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 281aa MW: 31162.1 Da PI: 8.6792

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca6236.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	46	90	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++eE+e++++a k++G Wk+I +++g ++t+ q++s+ qk+ Dca6236.1 46 REKWSKEEHEKFLEALKLHGRA-WKKIEEHVG-TKTAVQIRSHAQKF 90 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-16	40	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.763	41	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-10	43	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-15	44	93	IPR006447	Myb domain, plants
SMART	SM00717	4.0E-13	45	93	IPR001005	SANT/Myb domain
Pfam	PF00249	9.5E-15	46	89	IPR001005	SANT/Myb domain
CDD	cd00167	2.54E-11	48	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
EQTNDPQSNS SFTLESTIST DVCTQVVTKE GHVPKIRKPY TISKQREKWS KEEHEKFLEA 60 LKLHGRAWKK IEEHVGTKTA VQIRSHAQKF FVKVVRETSS TSVSSTMVEI PPPRPKKKPS 120 RPYPRKFVLP TEKEISKDLP TRSTSPSSSI YENRSPTSVM SPLASENLAS ENSAARNGSP 180 SPTSFAEAVN SAELFPSNDT EPRDISMKLE QFSSLDSVNM PESAPRKIIK LFGQDVVVPC 240 ELVFSPSSKT GQELQADNID MPTSGSINEL ANAVGIFREI N

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:23371945}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:19805390}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675239.1	5e-69	PREDICTED: protein REVEILLE 2 isoform X1
Swissprot	F4K5X6	3e-44	RVE2_ARATH; Protein REVEILLE 2
TrEMBL	A0A0K9R483	2e-61	A0A0K9R483_SPIOL; Uncharacterized protein
STRING	XP_010675239.1	2e-68	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	3e-31	MYB_related family protein

Publications ? help Back to Top
Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V A weed reaches new heights down under Plant Cell, 1999. 11(10): p. 1817-26 [PMID:10521514] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]