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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Dca6241.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 194aa MW: 21883.9 Da PI: 10.3593 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 15.4 | 3.5e-05 | 63 | 93 | 19 | 49 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
HLH 19 afeeLrellPkaskapskKlsKaeiLekAve 49
+f+eLr+ll + +a+ +K +K++iL A+
Dca6241.1 63 RFSELRKLLNSERAAKTQKSDKSSILHDAIC 93
8**********779**************995 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.280.10 | 1.3E-5 | 63 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 194 aa Download sequence Send to blast |
MGPRNKTKAQ VKGEENWSTK VKAQVGVVKE SQGQWSNGSW SREVHMKEAQ EEGSKRDVGA 60 LTRFSELRKL LNSERAAKTQ KSDKSSILHD AICAVYKLKS EHKELNGRNR KLQDDIQNLK 120 AEKNELKEEK LHLQATKQKM ERQIKYTTIP PGAQLGGGHK GVVICGYSGY STWQWIPPSV 180 LDVSRDHVLR PPVA |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010262298.1 | 6e-37 | PREDICTED: transcription factor bHLH104-like | ||||
| TrEMBL | A0A1U8AIK0 | 1e-35 | A0A1U8AIK0_NELNU; transcription factor bHLH104-like | ||||
| STRING | XP_010262298.1 | 2e-36 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G54680.1 | 9e-20 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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