PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca62484.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 263aa    MW: 29303.4 Da    PI: 4.391
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca62484.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.3e-13552350
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                ie++  rq +++kRrngi KKA EL   C+++ + i fs+ g+l  ++
  Dca62484.1  5 IEDDLSRQLSYAKRRNGIAKKALELFKVCGVDSLFISFSPYGRLSYFC 52
                9******************************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-4154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.769155IPR002100Transcription factor, MADS-box
CDDcd002664.56E-17375No hitNo description
SuperFamilySSF554552.22E-16377IPR002100Transcription factor, MADS-box
PfamPF003193.1E-12550IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAQLIEDDLS RQLSYAKRRN GIAKKALELF KVCGVDSLFI SFSPYGRLSY FCGDKRAEDV  60
LSRFAELPEH TRRHKYHLSA ESITTIEEAN AAEATLENAL AKIRDRLKQL SENPENKDES  120
QMSVDPDGDG NSSDDSWYKE FLTECENLSR MHSQADRGLE IHDCLSSETL TSQPSRATVA  180
QTSSPIRENV PQPTSSLPLE QSLLCDDLLN TINNPDERQT EGVQSSDPAG FESFDSLVFP  240
TTDLLSPDYQ SILSPVNHLA TAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-17AGAMOUS-like 104