PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca62504.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 557aa MW: 64647.4 Da PI: 7.92

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca62504.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.2	4.8e-07	38	130	6	89
FAR1 6 YAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle..leHnHel 89 A GF ++k+++ ++ +r+ e + f+Cs++g++++ + ++ +++ ++++++C+ +++ +++ +++ w++t + HnH+l Dca62504.1 38 IALANGFALVKANNGSKnRRQPELLASYFRCSRYGRSKSVFDP-DNPKKKPKTQKCDCQFRIRAVQNYhcldNERiilWNITIAKkfGFHNHDL 130 57889*99988765549999************9998877.67777778888888888876555546432223336666555334688887 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MQDSFENLGG DGVDYNPLFV TSDCFADSKL AHKWANEIAL ANGFALVKAN NGSKNRRQPE 60 LLASYFRCSR YGRSKSVFDP DNPKKKPKTQ KCDCQFRIRA VQNYHCLDNE RIILWNITIA 120 KKFGFHNHDL IKYKDGHRHY AGLDEDEKAF VKQEYSSSIA PRDIKSGLHH RTPDKPPPSS 180 RQIYNHTKSE EGYTWLLRRL MDNDEVMPKN DNDLFDELVE KARKSDPAHR KIFIETLHNY 240 LHPEDEDIRP PAIRENPKGR PRGSTTRSKS SFEHSQRTYG LPSTDDSTNV QHRVCDFPAG 300 EVGAPLEKDY TIGIFSSWTK RYGVPECLWS FFDGWKDIGN DGHYGYRVIS HAQRGQEDDY 360 VVMREWEIRE IRTHDVYKDF FGVTYKMPNG YTTYENTLRR IGFFSKSPCG DDHWLSSDDL 420 FVFATMFNWT IYVIGQYKDR KGDKAWQCST ILPLRSSFAC ANPYGVLWII NHNFHWMRLH 480 CKGSTHGVPM PPIDASWKTF REPSVSHLKS LYQDNIEYWH TCMGTTPRVP GKRSDNRNEV 540 LSQASRALVF DVESDEN

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MQDSFENLGG DGVDYNPLFV TSDCFADSKL AHKWANEIAL ANGFALVKAN NGSKNRRQPE  60
LLASYFRCSR YGRSKSVFDP DNPKKKPKTQ KCDCQFRIRA VQNYHCLDNE RIILWNITIA  120
KKFGFHNHDL IKYKDGHRHY AGLDEDEKAF VKQEYSSSIA PRDIKSGLHH RTPDKPPPSS  180
RQIYNHTKSE EGYTWLLRRL MDNDEVMPKN DNDLFDELVE KARKSDPAHR KIFIETLHNY  240
LHPEDEDIRP PAIRENPKGR PRGSTTRSKS SFEHSQRTYG LPSTDDSTNV QHRVCDFPAG  300
EVGAPLEKDY TIGIFSSWTK RYGVPECLWS FFDGWKDIGN DGHYGYRVIS HAQRGQEDDY  360
VVMREWEIRE IRTHDVYKDF FGVTYKMPNG YTTYENTLRR IGFFSKSPCG DDHWLSSDDL  420
FVFATMFNWT IYVIGQYKDR KGDKAWQCST ILPLRSSFAC ANPYGVLWII NHNFHWMRLH  480
CKGSTHGVPM PPIDASWKTF REPSVSHLKS LYQDNIEYWH TCMGTTPRVP GKRSDNRNEV  540
LSQASRALVF DVESDEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	88	PKKKPKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-