PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca6278.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 319aa    MW: 35550.9 Da    PI: 7.1081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca6278.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014158177120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C ++F+r  n++ H+
  Dca6278.1 158 FSCPLCFRTFNRYNNMQMHM 177
                89*****************9 PP
2zf-C2H214.30.00012242264123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk F  + + ++H +++
  Dca6278.1 242 FACRKCGKAFAVRGDWRTHEKNC 264
                78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.473158185IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-4158177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.1158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-6224262No hitNo description
Gene3DG3DSA:3.30.160.606.6E-6229262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.871242262IPR007087Zinc finger, C2H2
SMARTSM0035554242262IPR015880Zinc finger, C2H2-like
SMARTSM00355180268291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEVDKTFIIS SSSHHTSSHH HHDDDHHDDD DHEGVGVALH LGLPSYTQAD LISSLSSSST  60
TSNNPNHHHH HDDDHHHHHH DHHKYNNNDN SILVGGGGGD NNERSIEEVT IASSYSSSIG  120
GGGGGGYCNT AGIAAGSVNK GQYWIPTPAQ ILIGPTQFSC PLCFRTFNRY NNMQMHMWGH  180
GSQYRKGPES LRGTQPTAML RLPCYCCAPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK  240
PFACRKCGKA FAVRGDWRTH EKNCGKLWYC TCGSDFKHKR SLKDHIKSFG HSHSAYGIDC  300
FDEDDDPASE IEQDNDSVQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021728953.11e-138zinc finger protein WIP2-like
SwissprotQ9SVY11e-132ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A314Z4091e-136A0A314Z409_PRUYE; Zinc finger protein WIP2-like
STRINGXP_010673606.11e-138(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]