PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca6415.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family AP2
Protein Properties Length: 1003aa    MW: 98017.2 Da    PI: 9.4475
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca6415.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-20114163255
        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +grW AeIrd +   g + r++lg+f+taeeAa+a++aa+++l+g
  Dca6415.1 114 RYRGVRKRP-WGRWSAEIRDrV---G-KCRHWLGTFDTAEEAARAYDAAARRLRG 163
                8********.**********55...2.5*************************98 PP
2AP262.68.8e-20485534255
        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +grW AeIrd +   g + r++lg+f+taeeAa+a++aa+++l+g
  Dca6415.1 485 RYRGVRKRP-WGRWSAEIRDrV---G-KCRHWLGTFDTAEEAARAYDAAARRLRG 534
                8********.**********55...2.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-13113170No hitNo description
SMARTSM003801.7E-31114177IPR001471AP2/ERF domain
PROSITE profilePS5103222.998114171IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21114172IPR016177DNA-binding domain
PfamPF008472.8E-13114163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-28114171IPR001471AP2/ERF domain
PRINTSPR003671.1E-9115126IPR001471AP2/ERF domain
PRINTSPR003671.1E-9137153IPR001471AP2/ERF domain
CDDcd000181.21E-13484541No hitNo description
SMARTSM003801.7E-31485548IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21485543IPR016177DNA-binding domain
PfamPF008472.8E-13485534IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-28485542IPR001471AP2/ERF domain
PROSITE profilePS5103222.998485542IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MNNLNSRNVS SSRFTPHSSS PETFLPLPSF NPRAFPSRNV PLETSTAETT PSPPPMALDG  60
IAAVVGQHIL FGTTTETQPS KTNQNVSKRV SKRAHAKKKR FETCVEVSSL EEKRYRGVRK  120
RPWGRWSAEI RDRVGKCRHW LGTFDTAEEA ARAYDAAARR LRGSKAQTNF SVAPLVPHVG  180
PEAQKNTLYS YEQVAAYCMQ RNSSRSLFRL PKRHPWNHQA PSQQPLYITF HLATALLRRL  240
VADDHRGGPY YGSPPTWVLK PNYCNVSWGN GANHDGGGEG IGVGGTKEGD KVGVGGGDSG  300
IGVGGVVDGI TGGEAICGGV TIGVTGVGGG DANGITGVGG GDTIGITGVG GGDANGIVGV  360
GGGDAIGIIG VGGGEKGIGV GGGDATGGGR IGTGGGDAID GGRIGAGGGD AIGGGRIAET  420
TPSPPPMALD GIAAVVGQHI LFGTTTETQP SKTNQNVSKR VSKRAHAKKK RFETCVEVSS  480
LEEKRYRGVR KRPWGRWSAE IRDRVGKCRH WLGTFDTAEE AARAYDAAAR RLRGSKAQTN  540
FSVAPLVPHV GPEAQKNTLY SYEQVAAYCM QRNSSRSLFR LPKRHPWNHQ APSQQPLYIT  600
FHLATALLRR LVADDHRGGP YYGSPPTWVL KPNYCNVSWG NGANHDGGGE GIGVGGTKEG  660
DKVGVGGGDS GIGVGGVVDG ITGGEAICGG VTIGVTGVGG GDANGITGVG GGDTIGITGV  720
GGGDANGIVG VGGGDAIGII GVGGGEKGIG VGGGDATGGG RIGTGGGDAI DGGRIGAGGG  780
DAIGGGRIGT GGGDAIGGGR IGTGGGDAIG GGRIGAGGGD AIGGGRIGTG GGDAIGGGKI  840
GAGGGEAIGG GKIGVGGGGA IGGGRIGAGG GGSGGERIGT GGGGASGGER IGTGGGGGKI  900
GGGGGGGEAI GGDNMGVGGG GEKIGGGGDE KIGGGGGGEK IGIGGGGGGD DNTNGGDGGV  960
KSGGGGEGTK GANGGEGTKG GEGKVGGKTG GGPTIGDGTN GGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-16113541159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-161145411471Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1985991GGKTGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-24ERF family protein