PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca6453.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 1003aa MW: 114204 Da PI: 8.478

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca6453.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.2	1.3e-08	108	157	1	51
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke 51 +fYn+YA+++GF++rk+ +k++ ++g +t+vC+k+g+ + + +++ + Dca6453.1 108 EFYNSYATTCGFTMRKEGEKRN-EKGLPSYKTLVCNKHGEGKAKGAANSPK 157 6**************99998.777799*********99988772222 PP
2	FAR1	53.3	9.4e-17	190	273	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF++rk+ +k++ ++g +t vC+k+g+ + + + ++r++tr gCka++ k+ ++g+++v+k+++ HnH+++ Dca6453.1 190 QFYSSYATTCGFTMRKEGEKRN-EKGLPSYKTCVCNKHGQGKATGRI-----KKREVTRQGCKACVSFKMVENGEYMVYKFVEAHNHHMM 273 6**************99998.7777999******9998766.....99*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-5	108	157	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.0E-13	190	273	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.9E-26	395	488	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MESTVEDPSG TIVPSTSIQD TMMRDVSNTE TESTNAMETT DCVGSCSANE KDTTQKEADS 60 PTVTFQNQSA ANSPESTATK SCDGVPYCRD ELKPLVGKKF ASLEQGIEFY NSYATTCGFT 120 MRKEGEKRNE KGLPSYKTLV CNKHGEGKAK GAANSPKSTA TKSCDGVPYC RDELKPLVGK 180 KFASLQQAIQ FYSSYATTCG FTMRKEGEKR NEKGLPSYKT CVCNKHGQGK ATGRIKKREV 240 TRQGCKACVS FKMVENGEYM VYKFVEAHNH HMMTPTTMVH LKSGRELNVV HKKMIIDNSR 300 VNHGPVKTFR MFKEYVKGYN NIGASLQDFK NFSRDVKKYL KEYDAQMMIE TFIQKRAMCP 360 SFYFDFDVDE DQKLTKLFWA DPISIKNYAL YGDSCSFDTT FDFNKYKMVF APFTGVDNHK 420 KCVTFGAGLI SKEDADSFSW LFENFLKAVG GCYPTTLITD QCLGIKAGVD KVFSDKTHHR 480 YCMWHITKKM PEKVGASVSR DTDFLKEISA IIWGDEVEIE EFEAEWKNIV EKYDLSDNEW 540 LSQIFDMRKS WIPSYFRDTY LGGLLRTTSR SESENSFFSN FTNPQLSLVE FYMRFQSAMD 600 AQRWKNSKLT ADSKNSSPVI TTPLLMEKQA SEFYTPALFY EFQEELTACC FNCGLHSMRT 660 DENVEMITVN DRQRKKLYEV AYHENEISCS CKRFERFGML FGELWSELFT SVSLVENDEE 720 KTEELLALLQ SFNEQLLLDS KKKAKGKGKK AEIETLIGSK IPVEAHVLPP NIAKNKGSGK 780 RMMTDREKAT QEHQKPLRKC RACGEMANHD SRNCDKSPQS KKKKRHALWV LKDRGFQEIP 840 SEYMLSRWSK IAMCRPIFNV VGTTLLEDCA SVDTRQQKVG ELWSELFTSV SLVENDEEKT 900 EELLALLQSF NEQLLLNSKK KAKGKGKQAE IETLIGSKIP VEAHVLPPNI AKNKGSGKRM 960 MTDKEKATQE HQKPLRKCRA CGEMANHDSR NCDKSRQSKK KKR

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MESTVEDPSG TIVPSTSIQD TMMRDVSNTE TESTNAMETT DCVGSCSANE KDTTQKEADS  60
PTVTFQNQSA ANSPESTATK SCDGVPYCRD ELKPLVGKKF ASLEQGIEFY NSYATTCGFT  120
MRKEGEKRNE KGLPSYKTLV CNKHGEGKAK GAANSPKSTA TKSCDGVPYC RDELKPLVGK  180
KFASLQQAIQ FYSSYATTCG FTMRKEGEKR NEKGLPSYKT CVCNKHGQGK ATGRIKKREV  240
TRQGCKACVS FKMVENGEYM VYKFVEAHNH HMMTPTTMVH LKSGRELNVV HKKMIIDNSR  300
VNHGPVKTFR MFKEYVKGYN NIGASLQDFK NFSRDVKKYL KEYDAQMMIE TFIQKRAMCP  360
SFYFDFDVDE DQKLTKLFWA DPISIKNYAL YGDSCSFDTT FDFNKYKMVF APFTGVDNHK  420
KCVTFGAGLI SKEDADSFSW LFENFLKAVG GCYPTTLITD QCLGIKAGVD KVFSDKTHHR  480
YCMWHITKKM PEKVGASVSR DTDFLKEISA IIWGDEVEIE EFEAEWKNIV EKYDLSDNEW  540
LSQIFDMRKS WIPSYFRDTY LGGLLRTTSR SESENSFFSN FTNPQLSLVE FYMRFQSAMD  600
AQRWKNSKLT ADSKNSSPVI TTPLLMEKQA SEFYTPALFY EFQEELTACC FNCGLHSMRT  660
DENVEMITVN DRQRKKLYEV AYHENEISCS CKRFERFGML FGELWSELFT SVSLVENDEE  720
KTEELLALLQ SFNEQLLLDS KKKAKGKGKK AEIETLIGSK IPVEAHVLPP NIAKNKGSGK  780
RMMTDREKAT QEHQKPLRKC RACGEMANHD SRNCDKSPQS KKKKRHALWV LKDRGFQEIP  840
SEYMLSRWSK IAMCRPIFNV VGTTLLEDCA SVDTRQQKVG ELWSELFTSV SLVENDEEKT  900
EELLALLQSF NEQLLLNSKK KAKGKGKQAE IETLIGSKIP VEAHVLPPNI AKNKGSGKRM  960
MTDKEKATQE HQKPLRKCRA CGEMANHDSR NCDKSRQSKK KKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	744	750	KGKGKKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-84	FAR1-related sequence 5