PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca6482.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 362aa    MW: 40667.5 Da    PI: 6.4729
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca6482.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-18133185456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Dca6482.1 133 KKRLNMEQVKALEKNFEVANKLEPEKKMQLAKALGLQPRQVAIWFQNRRARWK 185
                556899**********************************************9 PP
2HD-ZIP_I/II128.62.5e-41131222192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqvk+LE++Fe  +kLepe+K++la++Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++dalk++n++L +++++L+++l 
    Dca6482.1 131 EKKKRLNMEQVKALEKNFEVANKLEPEKKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKDYNVLKRQFDALKADNDSLLSHNNKLHAQLI 222
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-19117189IPR009057Homeodomain-like
PROSITE profilePS5007116.827127187IPR001356Homeobox domain
SMARTSM003893.7E-16130191IPR001356Homeobox domain
PfamPF000469.9E-16132185IPR001356Homeobox domain
CDDcd000865.98E-16132188No hitNo description
Gene3DG3DSA:1.10.10.604.6E-19134194IPR009057Homeodomain-like
PRINTSPR000311.5E-5158167IPR000047Helix-turn-helix motif
PROSITE patternPS000270162185IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5167183IPR000047Helix-turn-helix motif
PfamPF021832.0E-17187228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MREMPFLSQD YMLYQPHNNH NHNHNDFDND HHHHHQQQDP SISLNILSSC PSQDFQAAPG  60
VPTLAMLNRS LSFSGYPDQH HHHGDHENEH GHDHHHHHHQ GGGGRGGGGG EEDEMSDDGS  120
QVVMVGPGGG EKKKRLNMEQ VKALEKNFEV ANKLEPEKKM QLAKALGLQP RQVAIWFQNR  180
RARWKTKQLE KDYNVLKRQF DALKADNDSL LSHNNKLHAQ LISLRNKEPI EYGAINLNNV  240
DTQNFWSNNG SEISSEMNLN NSRTPQTGSP LSSNPSTKLQ FSPTSFIPTN ISQILQTTSS  300
KTELDLQCSK IDPQLQEDTY CTMFNAASTG AGAGNDNDNG NAGIENQPPP FWGWPEHQQN  360
LN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102109GGRGGGGG
2179187RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839056.11e-169homeobox-leucine zipper protein HAT7-like
TrEMBLA0A0K9RRG41e-168A0A0K9RRG4_SPIOL; Uncharacterized protein
STRINGXP_010667539.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.16e-56homeobox 3