PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca6487.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CPP

Protein Properties

Length: 255aa MW: 28161.5 Da PI: 6.6942

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca6487.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	52.5	9.4e-17	28	66	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a + Cs+ C+Ce+CkN Dca6487.1 28 RHKRGCNCKKSMCLKKYCECYQASVGCSDGCRCEGCKNV 66 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	18.893	1	68	IPR005172	CRC domain
SMART	SM01114	1.6E-17	28	69	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.2E-12	30	65	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MLGVLRFENR GHGNLQEVQN LSTPASARHK RGCNCKKSMC LKKYCECYQA SVGCSDGCRC 60 EGCKNVFGIR EEYKIIRRFV VKKAADEMSE EIVDGKHENT TVGSNFGNSR VHASPNVIPT 120 TPTLQYSDLR KNTQKSRPSF MQFLQTPDSQ NDVLSSDENS LNCTENPQFH DMLSERCTEY 180 IEGALHTEKG FENTGDESTS SSSQRSNSAA TLIAPPSSNA IGLQDMSLPI QPHVMNESVV 240 PSTTGYHLQL GLSII

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670664.1	9e-59	PREDICTED: protein tesmin/TSO1-like CXC 2
Refseq	XP_010670665.1	9e-59	PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0K9QHI4	2e-53	A0A0K9QHI4_SPIOL; Uncharacterized protein
STRING	XP_010670664.1	4e-58	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-23	TESMIN/TSO1-like CXC 2