PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca667.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 365aa    MW: 40249.7 Da    PI: 6.4588
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca667.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.43.6e-09166220559
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
               kr++r   NR +A rs +RK  +i+eLe+kv + ++e ++L  +l+ l+     l
  Dca667.1 166 KRAKRIWANRQSAARSKERKMRYIAELERKVHAYQTEATSLSAQLNLLQRDTNGL 220
               9*********************************************998876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-14162226IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.128164227IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-10166220No hitNo description
PfamPF001706.2E-8166218IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.7E-10166220No hitNo description
CDDcd147031.95E-22167216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEKDKSLGLP PSGRTSPPKT AAFSHDISRM PEYPPKNTGH RRAHSEILSL PDDICFDGDI  60
TAADGGGPSF SDDTEEDLFS MYIDMDKVSS ETGDASSEFR SKEAVSGVRS RHQHSLSMDG  120
STAIDADMFG GGGGGGGGGG EEVSGVEAKK AMSAAKLAEL ALIDPKRAKR IWANRQSAAR  180
SKERKMRYIA ELERKVHAYQ TEATSLSAQL NLLQRDTNGL AAENGELKIR LQTMEQQVHL  240
QDTLNDALKE EIQHLKMLTG QAMSNGGPMM NFPTSYGNSQ PFYPNNQAMH NLLTAQQFQQ  300
LQIRSQKPQQ QQQFQHHQLH QRQQPQLQHH DSTHPTLLPT DYKTKPFMPT STENTSDSMS  360
GTLND
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672248.11e-147PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-112POF21_ARATH; Probable transcription factor PosF21
TrEMBLF6HYW71e-138F6HYW7_VITVI; Uncharacterized protein
STRINGXP_010672248.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-122bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]