PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7083.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 224aa    MW: 25057.8 Da    PI: 9.1231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7083.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1361109455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +   rE+ RRdr+N++f eL  +l +    +++Kl+Ka+iL+ A+e +k Lq
  Dca7083.1  61 TRACREKLRRDRVNERFLELSVVLEPG---KAPKLDKASILTDAIEMVKTLQ 109
                5678**********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.26857108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1458129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1462130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-1162109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1063114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-1065111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGFCDEQELD PSWLPVFSDH PSVGPVPLSG SSKDFSGTSD CLDECGRKRF RGGSSCAAAT  60
TRACREKLRR DRVNERFLEL SVVLEPGKAP KLDKASILTD AIEMVKTLQH ETTTLKKQNN  120
EIQQRINELK SEKKELRSEK YRLKKAKDDI EQRIKTLGVP QVMKFRPCVA PPPPPPPVCF  180
GTPTQPGRPK LMPVFNYPGV PLWHFAPRAS VDTSQDHAFH PPVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551GRKRFRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008224874.11e-57(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-42bHLH family protein