PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7186.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 194aa    MW: 21474 Da    PI: 8.6206
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7186.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.2e-194073134
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
               Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Dca7186.1 40 CSDCHTTTTPLWRSGPQGPKSLCNACGIRQRKAR 73
               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-193486IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-133573No hitNo description
PROSITE profilePS5011413.023870IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-163873IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.54E-144071No hitNo description
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
PfamPF003202.3E-174073IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKVDHHKVQH HDHVVQPQKN MKHHNTSYEN NGSHGFLRMC SDCHTTTTPL WRSGPQGPKS  60
LCNACGIRQR KARRAAMAAA AAAESTVTSP MSSTITTTTT TTIPSPKLAI DEEIKSKLNL  120
DHEKNNTLPL KKRSKTLHFS SFDNNNNNKE DSSINNIANI NNNNNSYFQR EFPSDEEEGA  180
ILLMALSCGL ACSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667257.13e-39PREDICTED: putative GATA transcription factor 22
TrEMBLA0A0J8B3F77e-38A0A0J8B3F7_BETVU; Uncharacterized protein
STRINGXP_010667257.11e-38(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-18GATA family protein