PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7309.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 212aa    MW: 24281 Da    PI: 10.5713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7309.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.5e-123751795
               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
               ++p +f++++gg    ++ ++l+d++gr W  kl    +s +  +t+GW +  k+ +L+ g+f+v++++++s+f  +v+
  Dca7309.1  3 RIPPPFIKNFGGR--IPRLVSLTDSRGRIWPAKL--GLRSHELHITEGWHQCTKDLRLRRGEFFVLRYVQNSTF--LVT 75
               69*****999887..6778***************..88888999*************************99988..554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.196180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-13381IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-7375No hitNo description
PfamPF023625.9E-10374IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-15382IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-4122197IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKRIPPPFIK NFGGRIPRLV SLTDSRGRIW PAKLGLRSHE LHITEGWHQC TKDLRLRRGE  60
FFVLRYVQNS TFLVTTYGID GCQKKESEAR IQRTRGDGFA AARDGHPADH TTTDLIIRFD  120
IKANLKNFVT IPKKVLLKCN FSLDQRITVR SNEGHFASSQ LRVTRDRFVL GYTGLTQLWE  180
KMGVQKGDEL EFEVICKNGN KISEIVVSNL SH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-10B3 family protein