PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca7400.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB

Protein Properties

Length: 226aa MW: 26314.7 Da PI: 8.1342

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca7400.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	9.9e-16	5	50	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd ll ++++q+G g W++I+ g +R++k+c++rw++yl Dca7400.1 5 AWSAEEDNLLRKCIQQYGEGKWHRIPLLAGINRCRKSCRLRWLNYL 50 6***************************99**********97 PP
2	Myb_DNA-binding	53.1	7.6e-17	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E +++++++k+lG++ W++Ia +++ gRt++++k++w+ + Dca7400.1 56 RGKFTEDEADIIIKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWHCH 100 89******************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.417	1	50	IPR017930	Myb domain
SMART	SM00717	4.4E-13	2	52	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.11E-28	5	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-22	5	57	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-15	5	50	IPR001005	SANT/Myb domain
CDD	cd00167	1.41E-10	5	50	No hit	No description
PROSITE profile	PS51294	26.48	51	105	IPR017930	Myb domain
SMART	SM00717	7.0E-16	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	56	98	IPR001005	SANT/Myb domain
CDD	cd00167	4.38E-10	58	101	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-24	58	106	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGGIAWSAEE DNLLRKCIQQ YGEGKWHRIP LLAGINRCRK SCRLRWLNYL RPNIKRGKFT 60 EDEADIIIKL HKLLGNRWSL IAGRLPGRTA NDVKNYWHCH LNKKLNSSSK IKTTNKIIAK 120 EQVDESSSPK NEAKSDELFH AHYYRDKLAK NNISVSSKET VSYVQDNSFA DHNNIVERQK 180 DGQISFEENR ALEELCTDID FDFEEIKMAA GDHQKCNWDF DELYII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-21	5	107	9	110	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006602623.1	8e-71	transcription factor MYB90
Refseq	XP_028213768.1	8e-71	transcription factor MYB90-like
Swissprot	Q9FNV9	2e-55	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A142D8G1	4e-73	A0A142D8G1_9CARY; Myb transcription factor 5 (Fragment)
STRING	GLYMA18G41520.1	3e-70	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-54	myb domain protein 113

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]