PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7696.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 281aa    MW: 30772.1 Da    PI: 10.305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7696.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31207264359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YYrC+s  gCp++k+ver+ +dp++++ tYeg+Hnh+
  Dca7696.1 207 DDYSWRKYGQKPIKGSPYPRGYYRCSSVrGCPARKHVERALDDPSMLVLTYEGDHNHP 264
                99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-14159203IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.4E-33190264IPR003657WRKY domain
SuperFamilySSF1182903.92E-27199264IPR003657WRKY domain
PROSITE profilePS5081130.951200266IPR003657WRKY domain
SMARTSM007741.5E-37205265IPR003657WRKY domain
PfamPF031061.2E-26207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
GIQSVEKLIK LLSRCQDVNL KPNTMSSSSW NDVEYKDVAD VVVSKFRKVI SLLDRTRTGQ  60
ARFRRGPKQV LLTGSHGSAF TRVQVQCPPP IPHVHKPVPV EPKTINFSTS AGNSVTTSSY  120
MSSLTADMES VQPSVSSSGF QITNMSSLGK PPLSGNSLKR KCISSKDVSN CGASSGRCHC  180
PKQRKSRMKR EVRVPAISVK TADIPPDDYS WRKYGQKPIK GSPYPRGYYR CSSVRGCPAR  240
KHVERALDDP SMLVLTYEGD HNHPSHVTDA TVAAALVLES S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-212032631271WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190RKSRMKRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021759456.11e-118probable WRKY transcription factor 7, partial
SwissprotQ9STX01e-76WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0K9QJ791e-116A0A0K9QJ79_SPIOL; Uncharacterized protein
STRINGVIT_18s0001g10030.t011e-101(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-70WRKY DNA-binding protein 11