PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7723.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 620aa    MW: 67544.9 Da    PI: 5.4131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7723.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31340398259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Dca7723.1 340 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 398
                7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33324400IPR003657WRKY domain
SuperFamilySSF1182907.19E-28332400IPR003657WRKY domain
PROSITE profilePS5081129.677334400IPR003657WRKY domain
SMARTSM007743.7E-37339399IPR003657WRKY domain
PfamPF031061.0E-26341398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MSHNNNSISF NNNDGRRNDQ VCRGVEFPVN LINNNHHTAG SGDHHDVHDD GVVRNNKVVG  60
EVDFFSGHHH NNNNNDDDDD DHVKEEESSR DPYHTSTAPD PTPHLPTVNT GLHLLTTNTG  120
SDQSTIDDSA SSDVEDKKAK QELAVLQVEL ERMNVENQKL KNMLSQVSQN YNALQMHLVN  180
LMQQQRLDKG ENQQQQQQQQ HEAITQGKVE EQNRSMIPRQ FLDLGPNANN ESNEQTSQTL  240
SDQDRTVLDR SLGSPQDMME IAPRNNNDGN SKDIMMYENG KGIIREESPD DSDTQGWVPN  300
KVPKLNVPRV ASPVEQAAAE ATMRKARVSV RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR  360
AYYRCTMAVG CPVRKQVQRC AEDRSILITT YEGNHNHPLP PAAMAMASTT SAAASMLLSG  420
SMPSGDGLMN PNFLARTMLP CSSSMATISA SAPFPTVTLD LTHSPNPLQN QRQQVAPQIP  480
PNFLAAMPQL FGQALLNNNN NNNNNNNQSR FSGLHVSSSS EDPSQLQLPN QNNPGLADTL  540
SAATAAITSD PNFTAALAAA ISSIIGGAGW ENNNNVTNNA PLGNPPSSSG ATTSGNNNSN  600
NINNENNTNN VTSSNSLQKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22326402176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686806.10.0PREDICTED: probable WRKY transcription factor 31 isoform X1
SwissprotQ9XEC31e-147WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A0K9S1P80.0A0A0K9S1P8_SPIOL; Uncharacterized protein
STRINGXP_010686806.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-114WRKY family protein