PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca7798.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

SBP

Protein Properties

Length: 982aa MW: 108702 Da PI: 5.9182

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca7798.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.5	2.4e-40	135	212	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adl++a++y+rrhkvCevhskap+++v ++ qrfCqqCsrfh ++efD +krsCr+rLa+hn+rrrk+++ Dca7798.1 135 MCQVEGCTADLTNARDYNRRHKVCEVHSKAPEAIVGNVVQRFCQQCSRFHLIQEFDGDKRSCRKRLAGHNKRRRKNNP 212 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.9E-32	130	197	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.24	133	210	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.14E-37	134	214	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.7E-30	136	209	IPR004333	Transcription factor, SBP-box
SMART	SM00248	260	745	775	IPR002110	Ankyrin repeat
SuperFamily	SSF48403	9.7E-9	746	861	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.9E-9	748	865	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.96E-10	749	862	No hit	No description
SMART	SM00248	1.9	803	833	IPR002110	Ankyrin repeat
Pfam	PF00023	0.018	804	827	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MKAVGKRSLE WDLNDWKWDS NLLLATPLNP GAYDRSRSSH FSPLVPRDLH LAANTNVGVS 60 NSLLPSLEET NPYNDGRIQR TAEKKRTIVV VHEDEGLNDE VTPVNLKLGE QVYPIVDAEG 120 DKGRKSKNGG TCHPMCQVEG CTADLTNARD YNRRHKVCEV HSKAPEAIVG NVVQRFCQQC 180 SRFHLIQEFD GDKRSCRKRL AGHNKRRRKN NPETSPSNVG SVADGINAGQ ILNLLLRLLS 240 NVPTNGSTQE NDQDLLSQIL RNLAASSGGC NTSGLLLGSQ ASPDVGTSNG IPEKDHSNNQ 300 ELSQTTAYAQ TGTLTRENQS KVSQTTSVPQ PKVFQATSDR VLTNGCVQDA SFEKQKLSGI 360 DLNAVYHDDS EVCIDDQTNV AFVNGAYWAE HTLPSPPPTS GNSSSTSGRS SSSSGEAQCR 420 TDRIILKLFE KDPNDMPNVL RSQILDWLSH SPTDIEGYIR PGCIVLTLYL RLNTSLWEQF 480 CYDLRSSLSR LLEASNDPFW KTGWIYTRIQ QRAAFVYDGQ VVLDTPLPFR SLRSQISSIS 540 PIALPTGETV KLVVRGSNLS GPTSRLLCGV EGKYLVQENC CDLVEGTEVT TEQDEIESLS 600 FSCSIPTVLG RGFIEVEDYD LSGCFFPFIV AEPELCYEIC TLEQEMQTVI EDEYNNQSEN 660 GEADAKSKAL DFVHEMGWLL HTYSLRFTEN QQVPLVNLFS FERLKWLVEF SMDHDWPSVL 720 RKLLDLLFSG IVDIGNYASV EDGLADIAPL HAAVRRNSRL MVEFLLRYVP NKVGNAVVGL 780 KQNQPDYGAS GNMLFKPDVV GAGGLTPLHI AASSTGSENV LDALLEDPGM VGIEAWKNAR 840 DSTGLTPSDY ASLRGHYRYL HLVQRKTNKK SANKQSTEKH VVVDIPSLSL LKPNQIPSDK 900 LKPIEFNSFY TEKPQTGQSC KLCDQIPYHR FGSGPLAFRP VMMSLVAIAV VCVCTALLFK 960 SEPQVCGIFG RFRWEALKYG AM

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MKAVGKRSLE WDLNDWKWDS NLLLATPLNP GAYDRSRSSH FSPLVPRDLH LAANTNVGVS  60
NSLLPSLEET NPYNDGRIQR TAEKKRTIVV VHEDEGLNDE VTPVNLKLGE QVYPIVDAEG  120
DKGRKSKNGG TCHPMCQVEG CTADLTNARD YNRRHKVCEV HSKAPEAIVG NVVQRFCQQC  180
SRFHLIQEFD GDKRSCRKRL AGHNKRRRKN NPETSPSNVG SVADGINAGQ ILNLLLRLLS  240
NVPTNGSTQE NDQDLLSQIL RNLAASSGGC NTSGLLLGSQ ASPDVGTSNG IPEKDHSNNQ  300
ELSQTTAYAQ TGTLTRENQS KVSQTTSVPQ PKVFQATSDR VLTNGCVQDA SFEKQKLSGI  360
DLNAVYHDDS EVCIDDQTNV AFVNGAYWAE HTLPSPPPTS GNSSSTSGRS SSSSGEAQCR  420
TDRIILKLFE KDPNDMPNVL RSQILDWLSH SPTDIEGYIR PGCIVLTLYL RLNTSLWEQF  480
CYDLRSSLSR LLEASNDPFW KTGWIYTRIQ QRAAFVYDGQ VVLDTPLPFR SLRSQISSIS  540
PIALPTGETV KLVVRGSNLS GPTSRLLCGV EGKYLVQENC CDLVEGTEVT TEQDEIESLS  600
FSCSIPTVLG RGFIEVEDYD LSGCFFPFIV AEPELCYEIC TLEQEMQTVI EDEYNNQSEN  660
GEADAKSKAL DFVHEMGWLL HTYSLRFTEN QQVPLVNLFS FERLKWLVEF SMDHDWPSVL  720
RKLLDLLFSG IVDIGNYASV EDGLADIAPL HAAVRRNSRL MVEFLLRYVP NKVGNAVVGL  780
KQNQPDYGAS GNMLFKPDVV GAGGLTPLHI AASSTGSENV LDALLEDPGM VGIEAWKNAR  840
DSTGLTPSDY ASLRGHYRYL HLVQRKTNKK SANKQSTEKH VVVDIPSLSL LKPNQIPSDK  900
LKPIEFNSFY TEKPQTGQSC KLCDQIPYHR FGSGPLAFRP VMMSLVAIAV VCVCTALLFK  960
SEPQVCGIFG RFRWEALKYG AM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	135	209	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672614.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Refseq	XP_010672615.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A0J8CTR7	0.0	A0A0J8CTR7_BETVU; Uncharacterized protein
STRING	XP_010672614.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1