PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7813.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 363aa    MW: 40754.3 Da    PI: 8.6918
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7813.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.1e-54141411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeel+++yL +k+++ +++  +++++vd++k+ePwdLp k+k +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdke++++ ++el
  Dca7813.1  14 LPPGFRFHPTDEELITYYLVNKISDPNFTG-RAVTDVDLNKCEPWDLPGKAKMGEKEWYFFNMRDRKYPTGVRTNRATNTGYWKTTGKDKEIYNSvTTEL 112
                79*************************999.88***************99999****************************************9988999 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+grap+gekt+Wvmheyr+
  Dca7813.1 113 VGMKKTLVFYRGRAPRGEKTNWVMHEYRV 141
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6311162IPR003441NAC domain
PROSITE profilePS5100560.62914162IPR003441NAC domain
PfamPF023652.2E-2815141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEGSEDRQPK EESLPPGFRF HPTDEELITY YLVNKISDPN FTGRAVTDVD LNKCEPWDLP  60
GKAKMGEKEW YFFNMRDRKY PTGVRTNRAT NTGYWKTTGK DKEIYNSVTT ELVGMKKTLV  120
FYRGRAPRGE KTNWVMHEYR VHSRSAYRSA KDEWVVCRVF QKSAGVKKYP TTQSTRAINL  180
EMGHNHHHHH ILPPMLPLDP TQFSPMGRTY MMNNLELAEL SRALRNNNNN NNNNNGASSS  240
NNLPTHSHLN YPLDGSGVGV GAGAGTGAGF TISGLNLNLG GSQGTPFIRP MMNNNGVQHD  300
VVITSSMLSG LENGYSSLDM NLLNGNNNIN INNNSNSNNG SSSSRYLNVE NCVDQFDNFW  360
PTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-551316816171NO APICAL MERISTEM PROTEIN
1ut4_B2e-551316816171NO APICAL MERISTEM PROTEIN
1ut7_A2e-551316816171NO APICAL MERISTEM PROTEIN
1ut7_B2e-551316816171NO APICAL MERISTEM PROTEIN
3swm_A3e-551316819174NAC domain-containing protein 19
3swm_B3e-551316819174NAC domain-containing protein 19
3swm_C3e-551316819174NAC domain-containing protein 19
3swm_D3e-551316819174NAC domain-containing protein 19
3swp_A3e-551316819174NAC domain-containing protein 19
3swp_B3e-551316819174NAC domain-containing protein 19
3swp_C3e-551316819174NAC domain-containing protein 19
3swp_D3e-551316819174NAC domain-containing protein 19
4dul_A2e-551316816171NAC domain-containing protein 19
4dul_B2e-551316816171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860809.11e-172protein CUP-SHAPED COTYLEDON 3
RefseqXP_021860810.11e-172protein CUP-SHAPED COTYLEDON 3
RefseqXP_021860811.11e-172protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1B2RWC81e-171A0A1B2RWC8_9CARY; NAC transcription factor 18
STRINGXP_010669469.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-101NAC domain containing protein 38