PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7815.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 335aa    MW: 36836.4 Da    PI: 5.0732
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7815.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1568.4e-18165221362
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                ++kr rr+++NRe+A+rsR+RK+a+++eLe+ v++L +eN +L    ++l++  ++lk+ 
  Dca7815.1 165 DVKRRRRMASNRESAQRSRKRKQAQLQELEQQVDQLGGENVTLF---KQLTDATQQLKDA 221
                579****************************************9...8888888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.2E-19163227IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.0E-14163219No hitNo description
PROSITE profilePS5021711.611165228IPR004827Basic-leucine zipper domain
PfamPF001701.3E-14166220IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.02E-12166218No hitNo description
CDDcd147021.46E-12168218No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MKPVYVDAGN YPMKRAPSEL TMDALFDHHS NTLSTDESTA VIKSCDEFFF QDDHDHHRGG  60
FTYPTTHDIV CSDVAFDFKN QEDLINGISN CGGFDQNILW YQNLTTNKQP TVSTIDSQSS  120
ICAGSPTSTL KPSKAGDNNQ GSGSSEDDDG ENELGQCELS DDGVDVKRRR RMASNRESAQ  180
RSRKRKQAQL QELEQQVDQL GGENVTLFKQ LTDATQQLKD ASTNNRVLKS DVEALRAKVR  240
LAEDMVTRGS LSSSLNHLIQ TQLSSHQVMN TRDLTRVANN VSPTFMVRGQ DTSVGATYSR  300
QNSGIVDDNL GHVLNVNARG GLGSDNVNCV SGIWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168185RRRMASNRESAQRSRKRK
2181186SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669482.14e-90PREDICTED: basic leucine zipper 9 isoform X1
SwissprotQ9FUD32e-57BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A438C2302e-79A0A438C230_VITVI; Basic leucine zipper 9
STRINGXP_010669482.11e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.15e-51basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]