PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7836.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 369aa    MW: 40383.8 Da    PI: 5.4663
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7836.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.42e-15203257357
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v +   eN++L k+l  ++++  
  Dca7836.1 203 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQVRVENSTLLKRLTDISQKFN 257
                689*****************************************99988877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.1E-12200257No hitNo description
SMARTSM003383.7E-18201265IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.231203258IPR004827Basic-leucine zipper domain
PfamPF001705.9E-13204254IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-11205254No hitNo description
PROSITE patternPS000360208223IPR004827Basic-leucine zipper domain
PfamPF124981.4E-21272362IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDRVFSVGDI SDHFWSPPPP PPPCDGGDPS MNRSASEWAF ERFLQESTAE NDVVEIKNNH  60
NNHNNNNNNN NRQRSEIGEG VVDETTSLAV DSEEYQAFLK SRLNLACAAV AMTKAPFVIN  120
QGSNPATAIA TQVSMESQSS SRPPCKGFEN KEVGGPAPNP PLPATQKKPI AQPVQATSYS  180
SEQSDDDEVE GENDTTDNTG STDVKRVRRM LSNRESARRS RRRKQAHLTE LETQVSQVRV  240
ENSTLLKRLT DISQKFNEAA VDNRVLKADV ETLRAKVKMA EETVKRATGM NPLLQAMSEI  300
SAMGMAAAFN GSNCNSVDAA VPVHHDLKQT HFYQPVENHL PVPPPRVDNG VPNISAVDNV  360
TSVLGVNKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217224RRSRRRKQ
2219224SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674829.11e-143PREDICTED: light-inducible protein CPRF2
SwissprotQ990906e-92CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0K9RTS91e-133A0A0K9RTS9_SPIOL; Uncharacterized protein
STRINGXP_010674829.11e-142(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-63bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]