PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8015.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 374aa    MW: 41498.5 Da    PI: 6.5695
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8015.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17245279135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Dca8015.1 245 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 279
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.569239275IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-18239289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-14243277IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.37E-15243303No hitNo description
CDDcd002021.15E-13244291No hitNo description
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15245279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDSEFEHCGS TSTNREQHFI VEDLLDFSND DGVVFEEDGN ITSSNSDSNY SNNNHLCDSN  60
NASGGGYGLV VTPPGSGNSS SSGNNNDVVF PSGGGESGLS EANFSGELCV PYDDLAELEW  120
LSNFVEESFS SEDLQKSHLV SGMTTSATKT RPELTGSSEA RYYPAEPLRP ESHQNPTFVP  180
EMPVPGKARS KRSRAAPGNW TSRLKVLSNG PGPGPRPEKP PSKKKCGPGA RSGHSELSDG  240
EVRRCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVQTKHSNSH  300
RKVMELRRQK EVMNQQQQRQ QQQYIQQQQQ QQQQHYHQQQ QQLIRQSSMM FDPTNNPEDY  360
LIHQHIGPDY RQLA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668515.11e-121PREDICTED: GATA transcription factor 12
TrEMBLA0A0K9QTY11e-110A0A0K9QTY1_SPIOL; GATA transcription factor
STRINGXP_010668515.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-76GATA transcription factor 12