PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8527.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 584aa    MW: 63878.9 Da    PI: 5.5072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8527.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-09481529348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lvd+v ++G+g+W+ I r        Rt+ ++k++w+++l
        Dca8527.1 481 AWTLTEVLKLVDGVSRFGPGRWSEIKRLSFssySYRTAVDLKDKWRNLL 529
                      7**************************9999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.788474533IPR017930Myb domain
SuperFamilySSF466892.92E-15476534IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-12476532IPR009057Homeodomain-like
SMARTSM007171.1E-8478531IPR001005SANT/Myb domain
CDDcd116602.02E-18480530No hitNo description
PfamPF002499.4E-7481529IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MEIVVRVDEN EQGCIKDCGN PSSESATLTQ VTDPVVYKLV RVDFDGKLVP ATDNELWDVE  60
DLLELDKDGI ATASNDFETA VRQGVDNDDS KTHQYKGLPQ IKSDEGDEDS AKPHLEDPLY  120
SSDLNTKKVD ISCNIMDGSG VDDGSNENGS AGSGLNLSSS KGEINLDKLT IRELQETFRA  180
TFGRETSIKD KMWLKRRIAM GLTNSCDVAV TSFVIKNGRL LDTMDGFHDT VEREGSVAVE  240
AMSADSGSHR NPRTDVEEVR TSKSSLADSG CRSDDSSEHR AAKRVRKPTK RYIEELSDVE  300
TNNPDGKSIS PSKRNEEDKV SLSSAIKTTL SVNTGAFVTR RDSIGGSRVQ VPYVSRVRRC  360
RPRQNITTLV NFESSGNATL TSTVNKSSDA PTKSESGTSS MAKDVKSVPC ENPIASEDLV  420
EKQSMASMSD GSQEREPKGT DSRSCSSRDN IDGNNSGTNS DDNVATVPTA KGGMRRKHHR  480
AWTLTEVLKL VDGVSRFGPG RWSEIKRLSF SSYSYRTAVD LKDKWRNLLK ASFSNLPAEE  540
GVHPRAKVPL PIPVPILVKV RELAEMNGQA PQPFKISKDS VCQV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720476.10.0uncharacterized protein LOC110688099 isoform X2
TrEMBLG5DWJ60.0G5DWJ6_SILLA; Protein TRF-like protein (Fragment)
STRINGXP_010685324.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-82TRF-like 6