PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8544.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 408aa    MW: 45184.2 Da    PI: 10.3304
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8544.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-1442129186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +Liea  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk +k     + ++ s ++p++d+++
  Dca8544.1  42 CWSEAATAVLIEAWGERYMELSRGNLKQKHWKEVADIVssrdDFGKIPKTDIQCKNRIDTVKKKYKVEKSKVVAG-CGPS-RWPFYDRID 129
                7*************************************87666678899********************999998.6665.8*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-2541131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSTPPPPSSS LTLALPIQQN SARVAVAAAV SGGGISYGRD DCWSEAATAV LIEAWGERYM  60
ELSRGNLKQK HWKEVADIVS SRDDFGKIPK TDIQCKNRID TVKKKYKVEK SKVVAGCGPS  120
RWPFYDRIDH LIGPTAAANS AGKAAVVAAV SGSGNGGIIP EAVPVGIPFG IRHQQMSLPF  180
PSYGSPQLRP PPHLQPPQPQ PLSMRHVFPT PVRFNHHNVN PNYANNVRHH QMMQQQQQQQ  240
QQQQQQFRRS PMVAQQAAPS QQPAPPAVES EEEAGGWSNE SEDSLPPETG YERRKKRART  300
EATTTSVGGR MKKNKGVREW GKSVRELTRA ILKFGEAYEM AESAKLEHIV EMEKQRMKFA  360
KELELQRMKF LMKTQLELSQ FNTTVVGSEN GVGSSTRRGN GGVDKTFR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720416.11e-114trihelix transcription factor ASIL2-like
TrEMBLA0A0K9Q9Q41e-105A0A0K9Q9Q4_SPIOL; Uncharacterized protein
STRINGXP_010685259.13e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.18e-45sequence-specific DNA binding transcription factors