PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8577.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 299aa    MW: 32476.7 Da    PI: 8.2231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8577.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.37.5e-34143200259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  Dca8577.1 143 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCMVKKRVERSFQDPSTVITTYEGQHNHP 200
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-35127202IPR003657WRKY domain
SuperFamilySSF1182903.79E-30134202IPR003657WRKY domain
PROSITE profilePS5081133.017137202IPR003657WRKY domain
SMARTSM007743.6E-40142201IPR003657WRKY domain
PfamPF031061.4E-26143200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSNFNEYLHG SMDYSSLTRS LGLSPTSSEV LSSVVDGGEK WQQMVVGKET TTVSGGGGGG  60
GDSRPGTPNS SISSSSTEAG GPVDDRSHGS GDVSKQMSHS KGTDDDQGGD ESKKGNKGKK  120
KGEKKQKEPR VAFMTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT QKCMVKKRVE  180
RSFQDPSTVI TTYEGQHNHP VPATLRGHAA ALLPHFSMLT QPPPLLSSNF PQELLAHFGY  240
GGASITTTNN NNNNINSNSS SNTNASSFPH FSQLQQIYNN DDYGLLQDMV PSSILKEEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29133203878Probable WRKY transcription factor 4
2lex_A1e-29133203878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666507.11e-104PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A0J8B5181e-103A0A0J8B518_BETVU; Uncharacterized protein
STRINGXP_010666507.11e-104(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-52WRKY DNA-binding protein 71