PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8901.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 245aa    MW: 28607.8 Da    PI: 7.5847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8901.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.3e-1525116198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffk+ + ++vl + +l++p +f++++g++   s+  tl  +sg   ev++   ++ ++ ++++GW +F ++n++k g f+ F++ ++ +f  +v++f+
  Dca8901.1  25 FFKIILFPSVLDHPMLRIPDTFTKKFGEQ--LSTVATLIVPSGIACEVEV--VRRENKLYFAQGWPQFMESNQIKHGYFLEFEYLENGRF--NVRIFD 116
                899999********************966..999****************..999999*************************9887777..999997 PP
2B332.21.9e-101532381499
                T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + l +pk f+e+h+ +++ +k+++l+   + r+W+v +   + ++++ lt   W +F k+n+ + + + +Fk  ++++ +lv++v+r+
  Dca8901.1 153 NYLHIPKWFVEQHMRDHTLNKEVKLQVmGDAREWSVPC--ARVQQGFRLTgVEWTKFTKDNNWRCRQVYTFKIAKKDSHSLVFQVLRS 238
                6799*********99999********97777*******..8888888888246*******************888899999***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.75E-2119120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1920120IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-1523116No hitNo description
SMARTSM010191.1E-1225118IPR003340B3 DNA binding domain
PROSITE profilePS5086312.01225118IPR003340B3 DNA binding domain
PfamPF023628.9E-1325116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-13137236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.404140239IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-9141237IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0054143239IPR003340B3 DNA binding domain
PfamPF023621.2E-7152238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSPNKVVAKQ SGMTVSSSSS YPFRFFKIIL FPSVLDHPML RIPDTFTKKF GEQLSTVATL  60
IVPSGIACEV EVVRRENKLY FAQGWPQFME SNQIKHGYFL EFEYLENGRF NVRIFDLSCC  120
EIEYPMHVEV EVEVEVDEEA ASFSIVVHPC HTNYLHIPKW FVEQHMRDHT LNKEVKLQVM  180
GDAREWSVPC ARVQQGFRLT GVEWTKFTKD NNWRCRQVYT FKIAKKDSHS LVFQVLRSSR  240
SHESV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-24B3 family protein