PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9174.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 309aa    MW: 34528.8 Da    PI: 9.7417
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9174.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.93.1e-08194286790
       FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle.....leHnHela 90 
                A e GF ++k+++ ++ +++ e   + f+C ++g++++  +  ek ++++ +++++C+ +++  +++    +++   w++   +      +HnHel+
  Dca9174.1 194 AFENGFALVKATNGQKnRKQPELLASYFRCCRYGRSKSVYDP-EKPKKKSRTQKCDCDFRVRAVQNYhsldNKRvvlWNI---ViskgfGNHNHELT 286
                7789**9999887655488999*************9999888.8888888888999988887655554553333222443...24446699***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-5193286IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNRRCQKSCS VNRRDCGGKL DDIRAATVGG LGSRVGTGAG VGWFPPAVGG CGRGSGWLLG  60
KRGKRGGLAV GGRARARGWW DVNSGGGGGS GRGWPEVERA AGGGGSGGRG MPWTAQNFVY  120
PWMDNPEFFL PVDGRPELSH LWLWTKHFIV LPWEDSPDSF EDFRGDDVDY NPLFVTKVCF  180
KDRDEAFDWA NNVAFENGFA LVKATNGQKN RKQPELLASY FRCCRYGRSK SVYDPEKPKK  240
KSRTQKCDCD FRVRAVQNYH SLDNKRVVLW NIVISKGFGN HNHELTKYKD GHRHYAGLDE  300
EEKAYIKQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-