PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca9643.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

BBR-BPC

Protein Properties

Length: 229aa MW: 25079.4 Da PI: 10.2583

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca9643.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	213	2.7e-65	42	229	111	301
GAGA_bind 111 lqqlsepqledsave......lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslD 204 q +++++e+ ++ +++ + ++++++ ++ +k+ k++kk+ ++ pke+k k++kk+s++s k+++ k+e+k+ D Dca9643.1 42 FQGSHHHNTEEITTIptitipVNDAANAVEPELKTDKP-TKKPKSSKKNPKTDAPKEPKPKATKKSSSAS----LKPKT-GGLKRERKNATA---AGYDD 132 33333333333222110000022222222233222222.2233333333344444444444444422221....12221.235555555433...22336 PP GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 s+ P CsCtG+ rqCY+WG+GGWqSaCCtt+iS yPLP+ ++r+g+R grKm +gaf klL++La+eGydl +++DLkdhWA+HGtnkfv i+ Dca9643.1 133 GSGTLSPFCSCTGVARQCYRWGSGGWQSACCTTNISEYPLPMRATRPGSRTPGRKMRHGAFVKLLQRLASEGYDLTTAIDLKDHWARHGTNKFVIIK 229 789999****************************************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.7E-56	1	229	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.6E-61	55	229	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGTYGSNYPM ISEANEDTSA PHFAWFHPGN YMSAMRNGIN PFQGSHHHNT EEITTIPTIT 60 IPVNDAANAV EPELKTDKPT KKPKSSKKNP KTDAPKEPKP KATKKSSSAS LKPKTGGLKR 120 ERKNATAAGY DDGSGTLSPF CSCTGVARQC YRWGSGGWQS ACCTTNISEY PLPMRATRPG 180 SRTPGRKMRH GAFVKLLQRL ASEGYDLTTA IDLKDHWARH GTNKFVIIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677416.1	6e-86	PREDICTED: protein BASIC PENTACYSTEINE7
Swissprot	O82286	1e-50	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A0K9RZC6	2e-83	A0A0K9RZC6_SPIOL; Uncharacterized protein
STRING	XP_010677416.1	2e-85	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	7e-50	basic pentacysteine 7