PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9721.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 344aa    MW: 39966.9 Da    PI: 4.5625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9721.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14389898
               -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               s +++s+ l++p kf+ ++ ++   s  ++l  ++g++W+v+l     +++ ++++GW++Fv+   ++ g fv+F ++g+ +f  +v+vf+
  Dca9721.1  3 SPSSQSQTLRIPEKFVGAYREELSASANVVLAVPTGETWNVTL--VEDDNKLWFREGWSDFVNKYSIDYGYFVMFGYEGNLRF--NVHVFD 89
               55667788***********656668889***************..999999**************************997777..899887 PP
2B352.49.3e-17245334999
                HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   9 dvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + ++s  l +p +fa++h   + +   ++ + +e+ +gr W+vk    k++++++++kGW  F+++ gL+ gD++vF+++ ++   l+v++ +k
  Dca9721.1 245 NLGNSFYLNVPSPFARKHlrcNDD--WERLIDFETDDGRHWTVKS--FKTGSKHMFGKGWIAFAREFGLEIGDICVFEVIPSKHDALKVHIAKK 334
                456668899**********87444..3458***************..999999*************************9977777789988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.126191IPR003340B3 DNA binding domain
SMARTSM010193.5E-8191IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-18293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19293IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-13289No hitNo description
PfamPF023621.1E-11389IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-20231335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19232335IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-16235331No hitNo description
PROSITE profilePS5086312.576237335IPR003340B3 DNA binding domain
SMARTSM010191.9E-6237335IPR003340B3 DNA binding domain
PfamPF023621.7E-14245334IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MLSPSSQSQT LRIPEKFVGA YREELSASAN VVLAVPTGET WNVTLVEDDN KLWFREGWSD  60
FVNKYSIDYG YFVMFGYEGN LRFNVHVFDL TACEITYCFD QEPSRDLLGP QQTDNDDNDD  120
DHDEEEEEEE EEEEEEEEED DDDDSDFECI GSPLRKRKRK RRRRRRRRRK DYSNARVVNS  180
EGEEDDDDQD NATEDESSDH SNGARITRRS SSRMKRETEM ISAMTAAGFP KPKAPYFAVQ  240
IKAYNLGNSF YLNVPSPFAR KHLRCNDDWE RLIDFETDDG RHWTVKSFKT GSKHMFGKGW  300
IAFAREFGLE IGDICVFEVI PSKHDALKVH IAKKSQLKST GFVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155169KRKRKRRRRRRRRRK
2156161RKRKRR
3156169RKRKRRRRRRRRRK
4158162RKRRR
5158168RKRRRRRRRRR
6159164KRRRRR
7160168RRRRRRRRR
8161168RRRRRRRR
9161169RRRRRRRRK
10162168RRRRRRR
11163169RRRRRRK
12163170RRRRRRKD
13165170RRRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-26B3 family protein