PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9722.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 320aa    MW: 36590 Da    PI: 4.5452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9722.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15389898
               -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               s +++s++l++p kfa+++  ++       ++l  ++g++W+v+l     +++ ++++GW++Fv+   ++ g f++F+++g+ +f  +v+vf+
  Dca9722.1  3 SPSSQSQILRIPEKFARAYreEL--SARANVVLAVPTGETWNVTL--VEDDNKLWFREGWSDFVNKYSVDYGYFMLFRYQGNLRF--NVHVFD 89
               56677889***********6544..45568***************..999999**************************997777..899887 PP
2B335.51.8e-11225307489
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                v  p + ++ g + +pk+fa+++ +   ++k++t+e ++g +  v++ ++++++++ l++GW   ++  +Lk+g  + ++l+++++
  Dca9722.1 225 VIFPYHLSSCGFMHVPKEFARTYLNC--KGKKVTVELRDGSQCAVRC-VENNRRSCSLSQGWPLAAQRARLKVGNLCFLELIDDKK 307
                44455555557789*********544..45689999999********.7999999*************************998654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.338191IPR003340B3 DNA binding domain
SMARTSM010199.9E-11191IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-21293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19293IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-14289No hitNo description
PfamPF023621.2E-12489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-16218313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-15218313IPR015300DNA-binding pseudobarrel domain
CDDcd100172.83E-11220306No hitNo description
PROSITE profilePS508638.233222316IPR003340B3 DNA binding domain
SMARTSM010192.3E-5222316IPR003340B3 DNA binding domain
PfamPF023621.5E-10222308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLSPSSQSQI LRIPEKFARA YREELSARAN VVLAVPTGET WNVTLVEDDN KLWFREGWSD  60
FVNKYSVDYG YFMLFRYQGN LRFNVHVFDL TACEITYRFD QEPSRDHLGP QQTDNDDNDD  120
DHDENDENLP ASGGIVVVSI SDEDDEMESD DESVTNSDSK MEVDSEDDEM AFLEGTETRS  180
DSEIDVRCSK LVSELPIWLK SFKRKLKVAF SAGFPIPANP YFVAVIFPYH LSSCGFMHVP  240
KEFARTYLNC KGKKVTVELR DGSQCAVRCV ENNRRSCSLS QGWPLAAQRA RLKVGNLCFL  300
ELIDDKKWVL KLYAAKLSYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-25B3 family protein