PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9875.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 318aa    MW: 35285.6 Da    PI: 5.9042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9875.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.7e-09122167555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h ++Er+RR+ + + f  L  +lP +     kK++K +iL +A++++++L+
  Dca9875.1 122 HIMAERKRRELLAQLFIALSAILPGL-----KKVDKTSILGEAIKHLQQLK 167
                899***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.01E-8110171No hitNo description
PROSITE profilePS5088812.925117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-13120180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6122166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-12122181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.468249318IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESLNEELAI ILGEDFPSPI SLESNISSPL AYNIPKVPSN LSISNEPISP IVCDIARNTT  60
TTTTNNNNNN NNNDNNSVHL AHEDPNNVQL LDGSSGKDEG KQQDGNKGKR KRKREPSQIY  120
DHIMAERKRR ELLAQLFIAL SAILPGLKKV DKTSILGEAI KHLQQLKEKV KSLEEAVAKQ  180
KVNSMVIVKR SRLVVDNDND KDEDEDEDDE DDSSCTVEDN CTNRDQGRRD GGGSDYPHIE  240
VKVSNKTLLL TLCCENRKGI SAKIFGEVEK HDNIILNSCI APFGVSAFNI TIVAQTEKTD  300
KKHVKNLVKS LHSILRSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111129RKREPSQIYDHIMAERKRR
2125130ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-39bHLH family protein