PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000072.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 814aa    MW: 92165 Da    PI: 10.0694
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000072.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.12.4e-2318100186
    trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W  qe+++Li+ar e+e++ ++ ++++k+ We+v++++rerg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  Do000072.1  18 QWGAQETRELIAARGEVEREAEAaRRSAKTMWEAVASRLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 100
                 7********************9735799************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.72E-181783No hitNo description
PfamPF138372.2E-2118101No hitNo description
PROSITE profilePS500907.481976IPR017877Myb-like domain
CDDcd136611.16E-156421788No hitNo description
SuperFamilySSF538501.55E-43422686No hitNo description
Gene3DG3DSA:3.40.190.101.6E-12473558No hitNo description
PfamPF133432.4E-32481683No hitNo description
PRINTSPR009094.9E-13536552IPR001188Bacterial periplasmic spermidine/putrescine-binding protein
Gene3DG3DSA:3.40.190.103.0E-51559715No hitNo description
PRINTSPR009094.9E-13565579IPR001188Bacterial periplasmic spermidine/putrescine-binding protein
PRINTSPR009094.9E-13583602IPR001188Bacterial periplasmic spermidine/putrescine-binding protein
PRINTSPR009094.9E-13669688IPR001188Bacterial periplasmic spermidine/putrescine-binding protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015846Biological Processpolyamine transport
GO:0009941Cellular Componentchloroplast envelope
GO:0042597Cellular Componentperiplasmic space
GO:0019808Molecular Functionpolyamine binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MMEVGGGGAG GRDERVPQWG AQETRELIAA RGEVEREAEA ARRSAKTMWE AVASRLRERG  60
YRRTADQCKC KWKNLVNRYK GKETSDPENG RQCPFFEELH AVFTERARNM QRQLLESESG  120
APLKRKLKRP SGDRSSGESD DEDDGGEESE DEKPMHSRKR KADDKKQQSQ LMSEKSRTSV  180
SSLHELLQDF LAQQQRIDIQ WQETMERRAQ ERVVFEQEWR QSMRKLEQES TILSGLEINP  240
MFQPSAFNQQ SALRENNWIR EPIGGGQKAT ARPATPRGCR AAAMEVQPLH LLLAQPHHPR  300
LPGLLPNRPT RYLPTSRLRL RVRRRRPKRL AAVPSRRPPG SQADAPGRSG WEWAPNAAAA  360
LAFQLAVCSL LFLFPTRARA LALPPPAGAA AAVEATQEEE DLEWEAALQK WKTKTYALSV  420
PLRVVALRGS FPPSWIKDFV EAQGKRLKFS PELRANLDGI FSEMSKCVEK GQVQPKSAMA  480
ADIVSIGDSW LGYAIRKGLL EPVKNAEEQD WFRSLSDRWK VHLFRNQNGE ADPNGSVWGV  540
PYRWGTMVIA YKKNKFKRHN LKPIQDWEDL WRPELAGKIS MVDSPREVIG AVLKHLGSSY  600
NTVDMETDVN GGREAVFKSF AQLQKQVQLF DSMNYLKSFS VGDVWVAVGW SSDVIPAAKR  660
MSNVAVVVPK SGSSLWADIW AIPCASRFQT DRIGGRIRGP SPLIHQWFDF CLQSARSLPF  720
RQDVIPGASP LYLENSVPEV PQDKNRRKPK LETNLVRGVP PPEILEKCEF LEPLSGKAEE  780
DYQWLVSRMQ RPQLGLFGNV LQKISSVLDL KSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ttl_A2e-164186873260Polyamine transport protein
3ttl_B2e-164186873260Polyamine transport protein
3ttn_A2e-164186873260Polyamine transport protein
3ttn_B2e-164186873260Polyamine transport protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880753.10.0uncharacterized protein LOC4336887
TrEMBLC5YF680.0C5YF68_SORBI; Uncharacterized protein
STRINGSb06g027530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1056922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-20Trihelix family protein