PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000082.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRF
Protein Properties Length: 197aa    MW: 21372.3 Da    PI: 10.3049
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000082.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.72.8e-2566110145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Do000082.1  66 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 110
                 79****************************************996 PP
2QLQ62.79.5e-221146237
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                +FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll++i++
  Do000082.1 11 PFTAAQYEELEHQALIYKYLVAGVPVPPDLLLPIRR 46
                9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.6E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2691146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-151145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.51766110IPR014977WRC domain
PfamPF088791.4E-2167109IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSGRWAARPA PFTAAQYEEL EHQALIYKYL VAGVPVPPDL LLPIRRGFVY HQPALGYGPY  60
FGKKVDPEPG RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVEA QLVAPLPHAQ  120
QQQQPPATAA GFQNHSLYPA VLTGNGGRAG GGGGGGMFGL GSTAQLQMDS AAAYATAAGG  180
GSKDLRTRFH PEKMTLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153GGRAGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5158440.0EF515844.1 Zea mays putative growth-regulating factor 5 (GRF5) mRNA, complete cds.
GenBankEU9627870.0EU962787.1 Zea mays clone 245531 growth-regulating factor mRNA, complete cds.
GenBankKJ7278580.0KJ727858.1 Zea mays clone pUT5949 GRF transcription factor (GRF5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976689.14e-97growth-regulating factor 3
SwissprotQ6AWY62e-82GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A1E5W6461e-142A0A1E5W646_9POAL; Growth-regulating factor 3 (Fragment)
STRINGSi011853m1e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-47growth-regulating factor 5