PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do000437.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 187aa MW: 18733.5 Da PI: 8.1184

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do000437.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	99.6	2e-31	40	84	3	47
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalr 47 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lr Do000437.1 40 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLR 84 57899***************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	37	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.5E-28	42	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	22.853	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MAGAGGATAV QQPAAAGASG GARSGAGAGA AGAPVADPRA EALRCPRCDS ANTKFCYYNN 60 YSLSQPRHFC KACKRYWTRG GTLRXELHVK AEAGGAGDHQ QKAAPGEQQS GSWELPTPSS 120 SNVDANIIAS DALMAAAASM NPAVSSTSTA AITAPSSFMY WGNGGIGGAA AAWPDLTNCG 180 SSIATLF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do000437.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582403	1e-118	KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957815.1	1e-36	dof zinc finger protein 2-like
TrEMBL	A0A0A9J3V1	1e-40	A0A0A9J3V1_ARUDO; Uncharacterized protein
TrEMBL	A0A3L6E5G7	2e-40	A0A3L6E5G7_MAIZE; Dof zinc finger protein DOF5.3
STRING	Pavir.Bb02818.1.p	1e-43	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-25	Dof family protein