PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000473.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 180aa    MW: 20334.2 Da    PI: 4.2682
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000473.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.93.1e-20861455
     G2-like  4 lrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55
                lrW+ +LH  Fv+av  LGG++ A P   k+ +e+m+v gLt++++kSHLQkYR 
  Do000473.1  8 LRWSDDLHMIFVKAVVYLGGPH-AKPfalKETMEAMGVMGLTIQNIKSHLQKYRG 61
                89******************98.888677889999*******************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-11263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-19561IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-15861IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQPTRSFLRW SDDLHMIFVK AVVYLGGPHA KPFALKETME AMGVMGLTIQ NIKSHLQKYR  60
GKFELGAEAC DEVPSTTSLS KAALDQAAKI LMDTDTVMLE MEMVNSFLMD DVEMVDNNFS  120
VDLVQMMEKE LMDEIQVVHG YNDNEANLSC SQLIEHNSQY PQTVIDEYIA DLANYAFGHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306319.16e-78myb family transcription factor PHL12-like isoform X1
RefseqXP_021306322.16e-78myb family transcription factor PHL12-like isoform X1
RefseqXP_021306325.16e-78myb family transcription factor PHL12-like isoform X1
TrEMBLA0A1E5WBP81e-132A0A1E5WBP8_9POAL; Uncharacterized protein
STRINGSb01g013080.12e-71(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154991216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.24e-14G2-like family protein