PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do000478.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

YABBY

Protein Properties

Length: 176aa MW: 19648.7 Da PI: 9.6133

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do000478.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	32.1	3.9e-10	4	29	2	27
YABBY 2 dvfssseqvCyvqCnfCntilavsvP 27 +++ ++e+vCyv+CnfCntilav+ Do000478.1 4 QITPAPEHVCYVHCNFCNTILAVTPS 29 67789*****************9754 PP
2	YABBY	77.4	4.5e-24	112	150	132	170
YABBY 132 fikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 f +eei+rikasnPdishreafs+aaknWahfP+ihfgl Do000478.1 112 FSREEIRRIKASNPDISHREAFSTAAKNWAHFPNIHFGL 150 889**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.4E-7	9	27	IPR006780	YABBY protein
Pfam	PF04690	3.0E-22	111	150	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MSAQITPAPE HVCYVHCNFC NTILAVTPSD LSLSICLDLS FPSSSRLPLK GKLKIKWKGK 60 GNQCTDIGKG CPSCGLIRRA LIKVMKQQFR RQAADQTINF YKHACIEMAH DFSREEIRRI 120 KASNPDISHR EAFSTAAKNW AHFPNIHFGL GPHESSKKLD EAIGAAGRPQ KVQDLY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do000478.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650352.1	4e-47	PREDICTED: protein YABBY 2
Swissprot	Q10FZ7	1e-46	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A1E5WCB8	1e-129	A0A1E5WCB8_9POAL; Protein YABBY 2
STRING	OB03G35470.1	2e-46	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-22	YABBY family protein