PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000534.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 747aa    MW: 80443.4 Da    PI: 6.3297
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000534.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.51.2e-30100184187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++fd+lea
  Do000534.1 100 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFDELEA 184
                 8*********************************************************************866665..******985 PP
2trihelix105.44e-33490575187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev aLi++r e++ r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  Do000534.1 490 RWPKIEVNALIQLRMELDMRYQETGPKGPLWEDISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 575
                 8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.53893157IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.6E-497157IPR009057Homeodomain-like
SMARTSM007171.9E-497159IPR001005SANT/Myb domain
CDDcd122036.15E-2999164No hitNo description
PfamPF138376.1E-2299185No hitNo description
SMARTSM007173.0E-5487549IPR001005SANT/Myb domain
PROSITE profilePS500907.178489547IPR017877Myb-like domain
PfamPF138371.6E-22489576No hitNo description
CDDcd122033.42E-28490554No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MQQPQQLHQD GGGSQYGAAQ PDMGPFSPPP AAATGPMPLS SRPPSTTQPP PQQQQPRASY  60
EELAAVSGGT GAGGGFDDEM LGGGGGGGGG GSSSGASSNR WPREETQALI RIRSEMDATF  120
RDATLKGPLW EDVSRKLADL GYKRSAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYRFFD  180
ELEALHAAAP QPQQQLPTAS TAMPLHVFAT PVSAPPPMSS MPPPPPGPMQ PAPISSAAPA  240
PAPAPVPAEM PPVQQQPLNM QGFSFSSMSD SESDNESEDD DMTAETGGSQ DHLGKRKRGG  300
GGGGSKKMMS FFEGLMQQVV ERQEEMQRRF MDTMEKREAE RTAREEAWRR QEVARLNREQ  360
DQLAQERAAA ASRDAAIIAF LQRIGGQSVQ PPIAVAVPMP IQTPPPPKQP PRQQHQHPPP  420
PSPQATTPQS KPISVAPLQQ QPKETPPRDA GTPRSAPPTS GASLELVPLT EQHVDSGLGG  480
GDGGAASSSR WPKIEVNALI QLRMELDMRY QETGPKGPLW EDISSGMRRL GYNRSSKRCK  540
EKWENINKYY KKVKESNKKR PEDSKTCPYF HQLEAIYSRK HLRSGAAASA SNVAIAAAPP  600
ALPEQPKPSR HEIEGKNIND GKRNNEGSGG GAPQVPTSNG DKAPTTTPAA LDADSGMKKP  660
EDIVRELNEQ PPREFTTDET DSDDMGDEYT DDGEEGEEDG KMQYRIQFQR PNPSGGTNTS  720
PAPATTTTAA PAVPTSAPTS TFLAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000534.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550330.0BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825673.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025825674.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A1E5V1S70.0A0A1E5V1S7_9POAL; Trihelix transcription factor GTL1
STRINGGRMZM2G016649_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-38GT-2-like 1