PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do000702.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Trihelix

Protein Properties

Length: 614aa MW: 66510.8 Da PI: 11.3439

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do000702.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.5	7.9e-09	15	98	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W++ e+ +Li+a + r + + l ++W++ ++++ + r f+r+ qC+ +++ l+kryk++ ++ s +p++ ql Do000702.1 15 WSDGETSTLIDAWGPAHLRRQPRHLLLKDWRAAASVVnahraaAGRRFNRTRAQCQTRIRTLKKRYKEELSRRPP------SGWPHLPQL 98 **************************************9999999******************97665543......246666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.5E-16	14	100	No hit	No description
Pfam	PF13837	3.5E-6	394	455	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MPSRKSPPEC ASGNWSDGET STLIDAWGPA HLRRQPRHLL LKDWRAAASV VNAHRAAAGR 60 RFNRTRAQCQ TRIRTLKKRY KEELSRRPPS GWPHLPQLRA FLVDTDGPPP GFPARTPARV 120 KREVKEEEEE VGGGSGCGLA GSWTVVPRRP RNAGAGSTGL CPATVVMNLA AAVTKLAEVY 180 ERVDMARIGA EKDKMEMEVQ QAMLDAVKMD QLKLETVPAP PTATRSLGSS SSARQARRQP 240 AKISCPTVAT HPLPSAAPRA TVTTRVPLAK VTSASFARAQ AKPSERTPPC RAADARIIHA 300 PTYSVYIHAP DVTTRFRWGR NTTDRSIDRS IAQQHKHHTP LTAAPHPPGL ATPRLASLSL 360 SLSLSRPARP PAARMSSSTR RRPLPPPPAW TPEPWSDGET SALLDAWGPS HLRARGGARR 420 PKAGRAPRTV DQCKNRVDYL KKRLRAERAR PRGAPPPPPP VSGWLDRLRA LLHLAPSAPP 480 GFAHRLGAKV KEEDENGDDK RPSGGAPLPR DWPPVPKRPR TAVSLSPLSA ASGEHPEGGG 540 RSCTEVAAAL DRLAGTYERV EAAKQREATR LEERRLEAMR DLEIERMRLL VDVAVTASVG 600 VDGAAAAATA GGDF

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MPSRKSPPEC ASGNWSDGET STLIDAWGPA HLRRQPRHLL LKDWRAAASV VNAHRAAAGR  60
RFNRTRAQCQ TRIRTLKKRY KEELSRRPPS GWPHLPQLRA FLVDTDGPPP GFPARTPARV  120
KREVKEEEEE VGGGSGCGLA GSWTVVPRRP RNAGAGSTGL CPATVVMNLA AAVTKLAEVY  180
ERVDMARIGA EKDKMEMEVQ QAMLDAVKMD QLKLETVPAP PTATRSLGSS SSARQARRQP  240
AKISCPTVAT HPLPSAAPRA TVTTRVPLAK VTSASFARAQ AKPSERTPPC RAADARIIHA  300
PTYSVYIHAP DVTTRFRWGR NTTDRSIDRS IAQQHKHHTP LTAAPHPPGL ATPRLASLSL  360
SLSLSRPARP PAARMSSSTR RRPLPPPPAW TPEPWSDGET SALLDAWGPS HLRARGGARR  420
PKAGRAPRTV DQCKNRVDYL KKRLRAERAR PRGAPPPPPP VSGWLDRLRA LLHLAPSAPP  480
GFAHRLGAKV KEEDENGDDK RPSGGAPLPR DWPPVPKRPR TAVSLSPLSA ASGEHPEGGG  540
RSCTEVAAAL DRLAGTYERV EAAKQREATR LEERRLEAMR DLEIERMRLL VDVAVTASVG  600
VDGAAAAATA GGDF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do000702.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792102.1	0.0	uncharacterized protein LOC112873338
TrEMBL	A0A1E5VWR8	0.0	A0A1E5VWR8_9POAL; Uncharacterized protein
STRING	GRMZM2G452695_P01	1e-108	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14022	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	5e-10	sequence-specific DNA binding transcription factors