PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000756.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 396aa    MW: 42288.7 Da    PI: 7.1715
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000756.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.6e-1563144286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k+ +++       ++pyfd+l+
  Do000756.1  63 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKIEKAKRGS-------SWPYFDRLD 144
                 *************************************87889976333778*****************99996.......5******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2461146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDDDGAASLS PSPSPSRSPS PLPVADPVTV AAAPPGHVAV AIPLRKPSPS SGGGGGGGRE  60
DAWSDGATST LIDAWGERFV ALGRGSLRHP QWQEVAEVVS SRDGYSKPPK SDVQCKNRID  120
TLKKKYKIEK AKRGSSWPYF DRLDDLLAPV LKPNSSSSSA AAAAARNAVP IVPPRINFPQ  180
RTRTPLQPSA GNKRRMPSPP PQASASSDSS DGFPPEAPSA LPNGKRQRLE EPAPAAAANG  240
AESSDSRVQG LRDLALAIRR LGEVYERVES VKREQELRME RERLDAAREL EDQRVQFFLK  300
MQAELSKATG AATAAAPMAV PIPADGNGTR RSGMAAEVAT SSNHRVRYRF KGSSHRHAEQ  360
QPHYQNNAAS GGNGSDSDNK EAEAEEDAED EEEESQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000756.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650910.0EU965091.1 Zea mays clone 283747 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952731.10.0trihelix transcription factor ASIL2
TrEMBLA0A1E5VT630.0A0A1E5VT63_9POAL; Trihelix transcription factor ASIL2
STRINGPavir.J27535.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-34sequence-specific DNA binding transcription factors