PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000835.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 326aa    MW: 36233.5 Da    PI: 8.4758
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000835.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69.1e-08225249226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  t++C+f + +G+Ck G++C+F+Hg
  Do000835.1 225 QTKPCHFLFSMGYCKKGENCPFSHG 249
                 699*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-6219250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906223251IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021223250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6223252IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-6225249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALSSSSSIN RRALLRLNIR KSVASVPSSL ARLWWLKQEM AIDECVSKLR KRIRRLHPCN  60
ADGIVSYIIS LKTPVEIRQY LFTSNDQIQR LIVEAKSSSL PSSQLVPLLP PPQPLSGGIY  120
TPFIHWQPHF HPSSSYHGIQ PALYPIDQVG QLQQHQFYPS GSCHGIRSQN TPIGSTGAFQ  180
SPFPGFIGLE EHFQSLSIPG DGLPSNYGNA CQSVTGYPPS SSKEQTKPCH FLFSMGYCKK  240
GENCPFSHGS DSPEMNNMKQ VQTLELSMLE KEISELLLSL QPPRVPIESL ASIYNERYGK  300
PLKIGGSCME GQQHDHSLTN VCLFLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753KLRKRIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000835.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803961.11e-141putative zinc finger CCCH domain-containing protein 51
TrEMBLA0A1E5VEW70.0A0A1E5VEW7_9POAL; Uncharacterized protein
STRINGPavir.Ba00523.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1517622