PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do000860.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

M-type_MADS

Protein Properties

Length: 169aa MW: 18117.6 Da PI: 8.2626

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do000860.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.2	7.8e-32	31	80	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Do000860.1 31 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 80 79***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.3E-41	23	82	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.221	23	83	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.51E-45	24	86	No hit	No description
SuperFamily	SSF55455	9.55E-31	24	89	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	25	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	25	45	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-27	32	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	45	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	60	81	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
ADLSCGPSKV KEQPAPTACG DKPGRGKIEI KRIENTTNRQ VTFCKRRNGL LKKAYELSVL 60 CDAEVALIVF SSRGRLYEYA NNSTNSEQDE AGACKQNPFP FVHGSLCVTG ACACALCGQA 120 AGNLGSQWHG RMGAWAAAGA LACLPLGLHH LALGDYMRSK ESWWLGQSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1c7u_A	1e-20	24	80	1	57	MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B	1e-20	24	80	1	57	MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
3mu6_A	1e-20	24	85	1	62	Myocyte-specific enhancer factor 2A
3mu6_B	1e-20	24	85	1	62	Myocyte-specific enhancer factor 2A
3mu6_C	1e-20	24	85	1	62	Myocyte-specific enhancer factor 2A
3mu6_D	1e-20	24	85	1	62	Myocyte-specific enhancer factor 2A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do000860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ430637	2e-89	AJ430637.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m23 gene).
GenBank	EU960810	2e-89	EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816640.1	1e-51	MADS-box transcription factor 3 isoform X3
TrEMBL	A0A1E5W968	1e-122	A0A1E5W968_9POAL; MADS-box transcription factor 3 (Fragment)
STRING	Pavir.Ea00226.1.p	4e-50	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	6e-38	MIKC_MADS family protein