PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do000955.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 215aa MW: 22405.4 Da PI: 9.5115

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do000955.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130	1.1e-40	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+aela++++ Do000955.1 31 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADATNSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELATVRA 129 7***********************************************************************************************998 PP DUF260 100 e 100 e Do000955.1 130 E 130 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.369	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-40	31	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MTAARRSCSL PAGAGAVAGA GPGSALNTIT PCAACKLLRR RCAQECPFSP YFSPLEPHKF 60 AAVHKVFGAS NVSKMLLEVH ESQRADATNS LVYEANLRLR DPVYGCMGAI LTLQQQVQAL 120 EAELATVRAE IVRHRYRPTA AATSPVATVL PSSHASQLLA ASAASRGLHA RRPVGTRTAT 180 LAAASSSSSS AVYAAAASSS TDYSSITNEN VPYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-40	31	134	11	114	LOB family transfactor Ramosa2.1
5ly0_B	9e-40	31	134	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do000955.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095831	1e-133	FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808905.1	1e-109	LOB domain-containing protein 15-like isoform X2
Swissprot	Q9AT61	6e-69	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1E5W3W5	1e-152	A0A1E5W3W5_9POAL; LOB domain-containing protein 13
STRING	Pavir.Ca01098.1.p	1e-109	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	8e-59	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]