PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001018.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 306aa    MW: 33076 Da    PI: 8.6626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001018.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-184393155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  ++g
  Do001018.1 43 CKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLIRG 93
                799*******.7*********32...35**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-134393IPR001471AP2/ERF domain
CDDcd000182.73E-3143101No hitNo description
Gene3DG3DSA:3.30.730.106.7E-2844101IPR001471AP2/ERF domain
PROSITE profilePS5103219.70444101IPR001471AP2/ERF domain
SMARTSM003809.7E-3644107IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-1944101IPR016177DNA-binding domain
PRINTSPR003671.1E-74556IPR001471AP2/ERF domain
PRINTSPR003671.1E-76783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MELQFQQPQS HPQQQRSYQQ PATKETKPRV RSKCGGGGGG GSCKFVGVRQ RPSGRWVAEI  60
KDTTQKIRMW LGTFETAEEA ARAYDEAACL IRGANTRTNF ATGAHASPPD SPLAARIRGI  120
LNHKKLKKNV VTPTVTFFPA AYHRAAGAIA IAAPTSSTST STITTTTSSV SPSSSPSSSI  180
NFSMSSNGVR TPILPAQSIA EEVYRPYLIS GSEEFQLASQ QQYEQSWALS TSLPSTDGCD  240
MANNNARSTV ADAELNKIKQ EKQCSASPHG MDRVQDKELL DTGNDPSDSL WDLPPICPVS  300
CRSLMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1332100271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042734e-73AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBankAP0149634e-73AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126154e-73CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699021.11e-150ethylene-responsive transcription factor RAP2-11
TrEMBLA0A1E5VKR90.0A0A1E5VKR9_9POAL; Uncharacterized protein
STRINGPavir.Bb00676.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-25related to AP2 11