PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001153.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 470aa    MW: 49318.7 Da    PI: 9.1531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001153.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv +v+  G+g+W++++   g+ R+ k+c++rw +yl
       Do001153.1 14 KGPWTPEEDLVLVSYVQDKGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.54.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
       Do001153.1  67 RGNFTEKEEQLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.449961IPR017930Myb domain
SuperFamilySSF466899.73E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-111363IPR001005SANT/Myb domain
PfamPF002497.0E-141461IPR001005SANT/Myb domain
CDDcd001679.03E-101661No hitNo description
PROSITE profilePS5129425.61862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2465116IPR009057Homeodomain-like
SMARTSM007173.2E-1666114IPR001005SANT/Myb domain
PfamPF002496.9E-1567112IPR001005SANT/Myb domain
CDDcd001677.02E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGRPPCCEKT GVKKGPWTPE EDLVLVSYVQ DKGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TEKEEQLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLSKVG  120
TGEGGAGAGT SGEAKSGRSA AHKGLWERRL QTDIHTARQA LREALSLDPA LPPAKLEPMP  180
APLPLTQPPV PLSPATYASS TENIRRLLQG WMRPGAGKAS SWPRSSASVL SGGEGASGSH  240
SGTARTPEGS TGTSKLEDAG KASPVPPFSM LESWLLDDGM GHGSAGLMGV PLADPKVGTG  300
EGGAGAGTSG EAKSGRSAAP KGQWERRLQT DIHTARQALR EALSLDTALP LAKLEPMPAP  360
QPQPPAMYAS STENIAHLLE GWMRPGAGKA SSWSRSSASV LSGGEGGPGS HSGTARTPEG  420
STGTGKVEDM GAAGPVPPFL MLESWLLDDG MGHGDAGLMG VPLADPCQFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001153.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821217.11e-139myb-related protein 306-like isoform X1
SwissprotP813923e-99MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A3L6RLD11e-148A0A3L6RLD1_PANMI; Uncharacterized protein
STRINGPavir.Fa00895.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-90myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]