PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001157.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

ZF-HD

Protein Properties

Length: 122aa MW: 12551.3 Da PI: 8.0471

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001157.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94	1.3e-29	32	86	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY eC++NhAas+GghavDGC+Ef+++ geegt+aal+CaACgCHR+FHRr v+ Do001157.1 32 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEEGTTAALRCAACGCHRSFHRRVVQ 86 68************************8.999******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	25	No hit	No description
Pfam	PF04770	1.6E-29	33	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-17	34	86	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.1E-25	34	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.645	35	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MKRMVILRRC HPPPPPPPVL LGGGCCGGAG GGVRYGECRR NHAASMGGHA VDGCREFLAE 60 GEEGTTAALR CAACGCHRSF HRRVVQRCCC CLCCGADAAA ASAARWDDGC SPESSASSTT 120 PS

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001157.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065618	4e-80	BT065618.1 Zea mays full-length cDNA clone ZM_BFb0349A13 mRNA, complete cds.
GenBank	EU971969	4e-80	EU971969.1 Zea mays clone 372958 mini zinc finger 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321184.1	4e-50	mini zinc finger protein 4
Swissprot	Q0J5F8	3e-34	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	A0A1E5VQB8	5e-80	A0A1E5VQB8_9POAL; Mini zinc finger protein 4
STRING	GRMZM2G370863_P01	2e-40	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-24	mini zinc finger 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]