PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001166.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 512aa    MW: 56791.3 Da    PI: 4.8455
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001166.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34801722103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++++++l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+ll++i 
    Do001166.1  80 FLSKTYDLVSEPALDGVISWGAAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRDSKHLLKRIV 167
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
    Do001166.1 168 RRRSS 172
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-3776169IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.1E-5576169IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3376169IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-1680103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3080169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-16118130IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340119143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-16131143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDHTHPRADA SSNPDAPYSA AAAALLLEPK LEDEDQMPLQ QLASPGPFVS LDQLMPGPAV  60
AEPPPRPLEA LLQGPQLPPF LSKTYDLVSE PALDGVISWG AAGNSFVVWD PSTFARDVLP  120
HNFKHNNFSS FVRQLNTYGF RKVHADRWEF AHEDFLRDSK HLLKRIVRRR SSPTQQSSIQ  180
PGSSSGESSL DPELHTLRRE KNALLEEVAR LKQEHCQTIE QMSTLNHRLE SAEDRQKQMV  240
SFLAKLLQNP SFVRQLKLHW EQKEIDSTRV KRKFLKHVPH SIESGESSSQ HGRESGSHFP  300
VSSPMATSVH DDIAELQNFL LEDDDLNFGM DPDNIGLDRV ESPDDIGALV QVFNTQEELE  360
LGSGAELLEM PPASGPLGQD PTIGRSKGKS ALHPGLHATS SEASCLGSIS DTMGVLSGTM  420
LGTASTMMDT DEEQMWGVDA SAPLQSTCSG LSQQTFSSLA SDPYLMDIAN KPEKFWDLDF  480
QTFDQEDLQL DKCAIDDPTH HHQQQQRNMK KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-247217211123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001166.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952622.10.0heat stress transcription factor A-3
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A1E5W5890.0A0A1E5W589_9POAL; Heat stress transcription factor A-3
STRINGSi016943m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-66heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]