PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001229.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 188aa    MW: 21235.9 Da    PI: 8.4095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001229.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.7e-11855347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+ Ed+ + +a + + ++   +W+ +ar++g +++ ++++ ++qk+
       Do001229.1  8 EWTKKEDKMFERALAVYDTDtpdRWHNVARYIGGTKSVEEVRRHYQKL 55
                     7*********************************************97 PP
2Myb_DNA-binding25.62.8e-08106150345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       WT+   +l+ +a + +  +   +W+ Iar +g g+++++++ ++ 
       Do001229.1 106 QWTAKQNKLFEQALAVYDRDapdRWHNIARAVG-GKSAEEVRRYYE 150
                      7*****************99*************.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.471460IPR017884SANT domain
SMARTSM007173.8E-11558IPR001005SANT/Myb domain
SuperFamilySSF466893.09E-12759IPR009057Homeodomain-like
PfamPF002491.4E-9855IPR001005SANT/Myb domain
CDDcd001675.12E-9856No hitNo description
PROSITE profilePS512939.927102157IPR017884SANT domain
SMARTSM007175.0E-7103155IPR001005SANT/Myb domain
PfamPF002494.6E-6105150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-6106159IPR009057Homeodomain-like
SuperFamilySSF466898.58E-13106160IPR009057Homeodomain-like
CDDcd001672.76E-7107153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASNSSSEWT KKEDKMFERA LAVYDTDTPD RWHNVARYIG GTKSVEEVRR HYQKLVVDIA  60
QIESEGVPFH WYASAPSPST LQRGTVIISL EQKIRASMSM SSPRAQWTAK QNKLFEQALA  120
VYDRDAPDRW HNIARAVGGK SAEEVRRYYE LLVQDVNHIE AGKVPFPAYR CPGGAPGNMA  180
MGGYEADR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-291174178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001229.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9695423e-79EU969542.1 Zea mays clone 331755 DNA binding protein mRNA, complete cds.
GenBankKJ7284093e-79KJ728409.1 Zea mays clone pUT6714 MYB-related transcription factor (MYBR41) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151113.13e-47uncharacterized protein LOC100284746
RefseqXP_004961116.13e-47protein RADIALIS-like 3
SwissprotF4JVB89e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1E5UUT91e-138A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
STRINGSi023770m1e-46(Setaria italica)
STRINGGRMZM2G150260_P011e-46(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-32RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]